Capsicum annuum (peppers): 107844059
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Entry
107844059 CDS
T04646
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107844059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107844059
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107844059
Spliceosome [BR:
cann03041
]
Complex C
Other components
Step II factors
107844059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SLFN-g3_helicase
TMEM247
AAA_30
nSTAND3
T2SSE
AAA_24
AAA_16
Flavi_DEAD
ResIII
AAA_7
Sigma54_activ_2
SRP54
ABC_tran
ATPase
Motif
Other DBs
NCBI-GeneID:
107844059
NCBI-ProteinID:
XP_016544038
LinkDB
All DBs
Position
10:221592918..221607502
Genome browser
AA seq
1285 aa
AA seq
DB search
MQQGDVGPIDLDKTTTTLEPDKSSSGGLFVPGKERVVFKPSERKSLLGLDALAIAKRGEA
AVESGFKVPRERLASVASSLDEDEEASAASGIDELGSGASNVSRNNVQRRYRESYASETS
VSGGAVTNEREDAETLLRPPLDENTEVRAASSGSLRSTISRGESVDRERDGSRYRDNYRS
ESREGRRRERRTSREEHHYRDSSRGYEREYDGDNGRKRSRYEGSRRTPGRSEWDDGRWEW
QDTPRRDSRSGSSSKRYEPSPSPKFLGASPDSRLVSPWLGDHTPHSSGAASPWDSVAPSP
IPIRASGSSIRSSSSRYGAKSSLIMSSTGSSLSEDGGDDINGASEDQNQEITESMRLEME
YNSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKKLS
QLTADNAQWEDRQLLRSGAVRGTEVQTDFDDEEERKVILLVHDTKPPFLDGRIVFTKQAE
PIMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQV
DADTATVGEDGEVDFKGEARFSQHLKKGEAVSDFALSKTLSQQRQYLPIFSVRDDLLQVV
RENQVVVVVGETGSGKTTQLTQYLHEDGYTDNGIVGCTQPRRVAAMSVAKRVGEEMETEL
GDKVGYAIRFEDVTGPSTVIKYMTDGVLLRETLKDPDLEKYRVIVMDEAHERSLNTDVLF
GILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVTKLYSKTPCEDYVE
AAVKQAMTIHITSAPGDILIFMTGQDEIEATCYALSERMEQLTSSTKQAVPNLLILPIYS
QLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDAL
QVFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKS
LKIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTDLGWKMVEFPLDPPLAKMLL
MGEQLECLNEVLTIVSMLSVPSVFFRPKERAEESDAAREKFFVPESDHLTLLNVYQQWKA
NQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHN
AARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHW
LAELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRTVQAEAERQNKEKEKEKRAK
ELQQVAMPGLKKGSTTYLRPKRLGL
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaggagatgttggaccaattgatctggacaagacgactacaacattggaacct
gataagagtagtagtggcggtctttttgttcctgggaaggagagagtagtttttaaacct
tcagagcggaaatcacttctagggcttgatgccttggcgattgccaaaaggggagaggct
gctgtagagagtggatttaaagttccaagggagagacttgcttcagttgcttcatcttta
gatgaagacgaggaggcatctgctgcttctggaattgatgagttgggaagtggtgcatct
aatgtttcacggaataatgtacagaggaggtatcgtgaatcgtatgccagtgagacatct
gtttcaggtggtgcagtaacaaatgaacgggaagatgctgagacactcctaaggcctccc
ttggatgagaacacagaggttcgagctgcatcttctgggagtttacgttctacaatatct
aggggcgagtcagttgatcgtgaaagggatggaagtagatacagggataattacagaagt
gaaagcagggaagggagaaggagagagagaagaaccagcagggaagagcaccattacagg
gattcatcacgtggttatgaaagagaatatgatggggataacggaagaaaaagaagtaga
tatgaaggttctaggaggactcctggaagatcggaatgggatgatggtagatgggagtgg
caagatacccctcgtcgtgatagtcgttccggtagtagtagcaagcgttatgagccttca
ccatctccaaagtttcttggtgcttcacctgattctcgacttgtttccccatggctcggg
gatcatactcctcattcttctggagctgcttctccatgggacagtgtggctccttctcca
attccaataagggcatctgggtcatcaataagatcttcaagttccagatatggtgcaaaa
tccagtttgattatgtcttctacaggaagttctctatctgaggatggaggagatgacata
aacggcgcctctgaagatcaaaatcaagagattactgaaagtatgcgtctagaaatggag
tataattctgatcgtgcctggtatgaccgcgaagaaggcagtacagtgtttgagggggat
ggttcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattagcc
aaaaaactggttcgtagagatggaagcaagatgtcacttgctcaaagtaaaaagttatca
cagctcactgcagacaatgctcaatgggaggatcgccagcttttgagatctggagctgtt
agaggtactgaggtgcagacagattttgatgatgaggaggaacggaaggttattcttctt
gttcatgatacaaaacccccctttttggatgggagaattgttttcaccaagcaagctgag
ccgataatgccaataaaggacccaacatcagatatggccataatttcacgtaaaggttca
gctctagttcgtgaaatacgtgaaaaacaaaacatgcacaagtctcgtcaaagattttgg
gagctagctggctcaaaactcggagatatccttggtgtggagaagagtgccgagcaggtt
gatgcagatactgctacagtgggcgaggatggtgaggttgattttaaaggagaggctaga
ttctcacagcacttaaaaaaaggggaagctgtcagtgattttgcattatcaaaaacactt
tcacagcaaaggcagtatcttcccatcttctctgtgcgagatgacttattgcaggtggtt
cgtgaaaaccaggtggtggtggttgttggagaaactggttctggaaagacaacacagcta
acccagtaccttcatgaagatggctatacagataatgggattgttggttgcacccaaccc
aggcgtgtggcagccatgagtgttgcaaaaagagtcggtgaagaaatggaaactgagctt
ggtgataaagttggatatgccattcggtttgaagatgtcactgggcccagtactgttatc
aagtacatgactgatggtgttcttctaagggaaacactcaaagatcctgatcttgaaaaa
tatcgtgtaattgtaatggatgaggcccatgaaagatcacttaacactgatgtccttttt
ggcattcttaagaaagttgtggctaggcgacgtgattttaagcttattgtcacttctgcc
actctgaatgcccagaaattctctaacttctttgggagcgtaccaatatttcacatacct
gggagaacctttccagttacaaaattgtatagtaaaaccccatgcgaagattatgtcgaa
gctgcagttaaacaagctatgaccatccatattactagtgcacctggtgatatactcatc
ttcatgaccggtcaggatgagattgaagctacctgttatgcactttcagagcgcatggaa
cagcttacctcatcaacaaagcaagcagtgcccaatctattaattcttcctatatactcc
caactgcctgctgatttgcaagcaaaaatattccagaaagctgaagacggggctcgaaaa
tgcattgttgctactaatattgctgaaacatccttgactgtcgatggaatttactacgtc
attgatacaggctatggtaaaatgaaggtgtacaatcctcgtatgggtatggatgctctc
caagtgttccccattagtcgagctgcggctgatcagcgtgctggtcgagctggtagaact
ggtccagggacttgttaccggctttatactgagaatgcatatgagaatgaaatgctgcaa
agccccgtgccagagattcaacggacgaatcttggcaatgtggttttgttgctcaagtct
ctcaaaattcagaacctgttggattttgattttatggatcccccacctcaggataacatc
cttaactccatgtatcagttgtgggtcttaggtgcacttaacaatgtcggggatttaaca
gaccttggctggaaaatggtggagttcccattggatcctccccttgccaaaatgctcttg
atgggagaacaactagaatgcttaaatgaggttctgactattgtttctatgctttcagtg
ccttcagttttctttagacccaaggaaagggcagaggaaagtgatgctgctagggaaaag
ttttttgtgccagaatctgatcaccttacactgcttaacgtttaccagcaatggaaagct
aatcaataccggggtgactggtgtaatgaccactttttacaggtcaaaggtctgcgcaag
gctagggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacc
tcctgtggtcctgattgggatgttgtaaggaaagccatctgctctgcctacttccataat
gcagctaggctgaagggagttggggaatatgttaattgcaggaatggaatgccttgtcac
ctgcatcctactagtgctctctatggattgggttacactcctgacaacgtagtgtatcat
gagctaatcttgacatcaaaggagtacatgcagtgtgtgacagctgtggagcctcactgg
ttagctgagctggggccaatgtttttctccgtgaaggattctgatacatcaatgctggaa
cataaaaagaaacagaaagaggaaaaaactgccatggaagaagaaatggagaagttgagg
actgtccaggctgaagctgagagacaaaacaaggagaaggagaaggaaaagagagcaaaa
gagctgcaacaggttgcgatgcctggtttaaagaaaggctcaaccacttatttacgacct
aagaggctcggtctgtaa
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integrated database retrieval system
