Capsicum annuum (peppers): 107845244
Help
Entry
107845244 CDS
T04646
Name
(RefSeq) endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cann03036
]
107845244
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107845244
microRNA pathway
RISC loading complex
107845244
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
Helicase_C
PAZ
DND1_DSRM
DEAD
ResIII
SNF2-rel_dom
SLFN-g3_helicase
Cas3-like_C_2
Flavi_DEAD
DAGK_prokar
TrbI_Ftype
Motif
Other DBs
NCBI-GeneID:
107845244
NCBI-ProteinID:
XP_047254009
LinkDB
All DBs
Position
10:87670147..87695413
Genome browser
AA seq
1912 aa
AA seq
DB search
MEGGDGGVSGKPSYWIDVCEDISCDDLIQDFVGFDGNTAITGSSIVPVGSQLGTDESLDP
CFFGGIDGILEKLKNGDGNNSNRHSEASAAPEISKNNGIQVNKDVEHNTGDGGKKCLYEG
KGSSRHKERGYYDKEERNGKRARLSDDSHQRGVCDRPLARKRPRENDDINRVGRDQRKRG
ENHGGGVGRDRNGREPSGFWEWDKERKELVYRVGSWEADRNREGKLPTEKSREPSGDFEK
KDDKSKEQAPKEQARKYQLDVLEHARKSNTIAFLETGAGKTLIAILLMKSLCSELQKKNK
KMLAVFLVPKVPLVYQQAEVIREQTGYQVGHYCGEMGQDFWDARRWQREFETKQVLVMTA
QILLNILRHSIIKMEAINLLIMDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASP
VNLKGVSSQVDCAIKIRNLETKLDSVVFTIKDRKELEKHVPMPSEVVVEYDKAASLWSFH
EQIKQMELTVEEAAQLSSKRSKWQFMGARDAGVRVELHQVYGVSERTESDGAANLIQKLR
AINYALGELGQWSAYKVAHSFLIALQNDERASYQLDVKFQESYLDKVVSLLQCQLSEGAI
AESNLNGEMDKGDDPNSDRLDEMEEGELLGSHVVSVGEHVDVILGAAVADGKVTPKVQSL
IKILLKYQHTEDFRAIIFVERVVTALVLPKVFEELPSLSFITSSSLIGHNNSQEMRTGQM
QDTIAKFRDGRINLLVATSVAEEGLDIRQCNVVIRFDLAKTILAYIQSRGRARKPGSDYI
LMVERDNASHEAFLRNARSSEETLRKEAIERTDISHLKDASKLISGEAPRDSVYQVESTG
AVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKSGCPTEYSCRLQLPCNAPFDEL
EGPVCSSMRLAQQAVCLDACKKLHQMGAFTDMLLPDKGSGVESEKVEQDEEGDPIPGTSR
HREFYPEGVADILRGDWILSGKDSCVSSKFIHLYMYAIKCENIGTSKDPFLTDVSEFAIL
FGNELDAEVLSMSIDLFIARTVKTKATLVFRGPIDVTESQLASLKSFHVRMMSIVLDVAV
EPSTTPWDPAKAYLFAPVTGDESGDPTKDINWDHIEKITKPDVWSNPLQRARPDVYLGTN
ERALGGDRREYGFAKLRDGLAVGLKSHPTYGIRGAIAHFDLVKASGLVPNWSGLNVVDVD
MNKDKIAMADCFLRAEDIVGRIVTAAHSGKRFYVDCIRNDMTAENSFPRKEGYLGPLEYS
SYAAYYKQKYGVDLVYKKQPLIRGRGVSYCKNLLSPRFEHSEEPENKLEEATDKTYYVFL
PPELCLLHPLPGSLVRGAQRLPSIMRRIESMLLAVQLKEMIGYPVPALKILEALTAASCQ
ETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQNALSKGLQS
YIQADRFSPSRWAAPGVLPVYDEDIYEDESSMFDDDTTENGTVAAKALAGDEFEDEETEE
GELDNDSGSYRVLSSKTMADVVEALIGVYYVEGGKYAANHFMKWIGVQVDFNFKETEYSI
RSYSIPENVLRSVDFDALQGALNRSFNDKGLLLEAITHASRPSSGVSCYQRLEFVGDAVL
DHLITRHLFFTYTDLAPGRLTDLRAAAVNNENFARVAVKHSLHLHLRHGSSALEKQIRDF
VNEVKNELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSRCNTKAVWEVFQPLLHPM
VTPETLPMHPVRELQERCQQEAQGLEYKATRSGNMATVEVYVDGLQVGMAQNPQKKMAQK
LAARNALVVLKEREEIEAKKADDGNKKKNGNPSFTRQTLNDICLRKNWPMPLYRCVNEGG
PAHAKRFTYGVRVNTQVEGFTDECIGEPMPSVKKAKDSAAALLLELLNRRYS
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atggagggtggtgatggtggagtttctggaaaaccctcttactggattgatgtttgtgag
gacatttcatgtgatgatctcattcaagattttgttgggtttgatggtaacacggcgata
actgggtcgagtattgtccccgttgggagtcaattgggtacagatgagagtcttgatcct
tgcttttttggtggtattgatgggattcttgaaaaattaaagaatggtgatggaaacaac
agcaatagacatagtgaagcttcagctgcacctgaaatttccaagaacaatgggatacaa
gttaacaaggatgtggagcacaacactggtgatgggggaaagaagtgtttatatgaagga
aaaggatcttctaggcataaggaacgaggttattatgataaagaagagagaaatggaaaa
agggcgcgacttagtgatgatagccaccagagaggagtctgtgatagacctttggctagg
aagaggccccgggagaatgatgacatcaatagagtagggagggatcaaagaaaaagagga
gaaaatcatggtggtggtgttggaagagataggaatgggagggaaccgagtggcttttgg
gaatgggacaaagaaaggaaagagttggtctatcgggtgggttcatgggaagccgataga
aatcgagaggggaagttaccaactgagaaaagccgtgaaccttctggagattttgagaag
aaagatgacaaatcaaaggaacaggctcccaaggagcaagcacgcaagtatcagctggat
gtacttgaacatgccagaaagagcaataccattgcttttcttgaaacaggagcaggaaaa
acacttattgccatcctcctcatgaagagtctatgtagtgagttgcaaaagaagaacaag
aaaatgctagcagtttttctggttcctaaagttccacttgtttatcagcaagcagaagtt
attcgtgaacaaactggttatcaagttggccattattgtggtgaaatgggccaagatttt
tgggatgcacgaaggtggcagcgtgaatttgaaactaaacaggtcctggttatgactgct
cagattctcttgaacatcttgaggcacagtataataaaaatggaagcaattaatctcctt
attatggatgaatgccaccatgctgtgaagaagcatccatattctttagtaatgtctgag
ttctatcatacaacaccaaaggagaaaaggccatctgtttttggcatgactgcttcacct
gttaacttgaagggtgtttccagccaagttgattgtgcaataaagattcgtaacttggag
acgaaattagattctgttgtctttaccataaaggaccgcaaggagctggagaaacatgtg
ccaatgccgtcagaagtagtagtggaatatgataaagctgctagtctgtggtcctttcat
gaacaaataaaacaaatggaattaactgttgaagaagctgctcagttaagttccaaaaga
agtaaatggcaatttatgggtgctcgtgatgctggagttagagttgagctccaccaagtc
tatggtgtgtctgaaagaactgaaagtgatggggctgctaatctaattcaaaagttgagg
gctattaactatgctcttggtgaactgggacagtggtctgcctataaggtagcacattct
tttttgatagctctacaaaatgatgaaagggcaagctaccagctcgatgtcaagttccaa
gaatcgtacctggataaggttgtctctctcttgcaatgtcagttatcagagggagccatt
gcagaaagtaacttgaatggtgagatggataaaggtgacgatccgaatagtgataggctt
gatgagatggaggaaggcgagcttcttggaagtcatgttgtatctgttggagagcatgta
gatgtgattctaggagctgctgtagctgatgggaaagtgacacctaaagttcaatcatta
attaagatacttctcaagtaccagcatactgaggattttcgtgctataatattcgttgaa
cgcgttgtgactgcattggttcttccaaaggtttttgaggagctcccttccctaagtttt
atcacttcttcaagtttaattgggcataacaatagtcaagaaatgcgaacaggccaaatg
caggatacaattgccaaatttcgagatggtcgtattaatctgttagttgccactagtgtt
gcggaggaaggacttgacatccggcaatgcaacgttgtcattcggtttgacctggccaaa
accattttggcgtatattcagtctaggggccgcgcccgtaagcctggatcagattatatt
ttgatggttgagagagataatgcatcacatgaagcatttctgaggaacgccagaagcagt
gaagagactttgcggaaagaagcaattgagcggactgatattagtcatctcaaagatgcc
tccaagttgatctctggggaggcaccaagagattcagtttatcaggtggagtccactgga
gctgttgtgagcttaaattctgcagttgggttgatccacttctattgctcccaattacca
agtgacaggtactcaattctccgtcctgagtttataatggagcgtcatgagaagtcaggt
tgcccaactgaatattcatgcaggcttcaactcccctgcaatgcaccttttgacgaactt
gaggggcctgtatgcagctcaatgcgccttgcccaacaggctgtttgcttggatgcttgc
aagaagctccaccagatgggggcatttacggacatgctcttgccagacaagggaagtggg
gtggaatcggagaaagttgaacaggatgaggaaggtgatccaattcccggaacttccagg
cacagggaattttatcctgaaggtgtagctgatattctgaggggtgactggattttgtcg
ggaaaggattcttgtgtcagctcaaagttcattcacctttatatgtatgctatcaaatgt
gagaatattggcacctcaaaggacccattcttaactgatgtgtcagagtttgcaatactg
tttggcaatgagctggatgcagaggtattatcgatgtcgatagatttatttattgctcga
actgtaaaaaccaaggcaactcttgtcttcagagggccaatagacgttactgaatctcag
ttggcgtcccttaagagctttcatgtaagaatgatgagcattgttttggatgttgctgtt
gagccgtccaccactccttgggaccctgcaaaggcatatctatttgcccctgttactggt
gatgaatctggagatcctacaaaagatatcaactgggatcatattgaaaaaattactaaa
cctgatgtatggagcaatcctcttcagagagctcgcccagatgtatatcttggcaccaat
gagcgtgctcttggtggagaccgaagggaatatggctttgcgaaattgcgagatggtttg
gccgttggactgaagtctcatcctacatatggtattagaggtgctattgcacactttgat
ttggtcaaagcatctggattggtccctaactggagtggccttaatgttgttgatgttgat
atgaataaagacaaaatagccatggctgactgttttcttagagccgaagatattgtagga
agaattgtcactgcagctcactctggaaagagattttatgttgattgcattcgcaatgat
atgactgcggagaactcatttccaaggaaagaaggttacctaggtcctctcgagtacagc
agttatgctgcttattataagcaaaagtatggagttgatttggtctataaaaaacagcct
ctaataagaggccgcggtgtttcatattgcaagaaccttctgtcaccacgatttgaacat
tcagaagaacctgagaataaactcgaagaggcaactgataaaacgtattatgttttcctc
cctcctgagctgtgtcttttacatccacttcctggatcccttgttcggggtgctcagaga
ttgccctcgatcatgaggaggattgagagcatgctgcttgctgttcagcttaaggaaatg
attggttaccctgtcccagctctgaagatcttggaagcattgaccgccgcttcttgccag
gagactttctgctatgaaagagctgaacttcttggagatgcatatctgaaatgggttgtt
agtcgttatcttttcctcaagtatccccagaaacatgaaggtcaactcaccaggatgaga
caacaaatggtaagcaacatggtactgtatcaaaatgccttgagtaagggactccagtca
tacatccaagcagatcgattttctccatctagatgggccgctcctggggtgttgcctgtg
tatgacgaggacatctatgaggatgagtcatccatgtttgatgatgacacaacagaaaat
ggcactgtagcagcaaaggctctagctggtgatgagtttgaagatgaggaaactgaagaa
ggtgagcttgataatgattcaggttcgtatcgtgtactctctagcaagacaatggctgat
gttgtggaagcactgattggagtatattatgtcgagggtggaaagtatgctgcaaaccac
ttcatgaaatggattggggttcaggttgatttcaatttcaaagagactgaatactctatt
aggtcttatagcattcccgagaatgtactcaggagcgtcgactttgatgcattacaaggt
gctttgaatcgcagcttcaatgataaaggcttactgctagaagccattacccatgcgtca
cgcccatcttctggggtctcctgttatcaaagactggagtttgtgggtgatgcagtatta
gatcatctcatcacgaggcacttgttctttacgtacacagatctggccccaggccgattg
accgacttaagagctgcggctgtgaacaatgaaaattttgcacgtgttgctgttaaacac
agtcttcatttacaccttcgtcatggatccagtgctctagaaaaacagattcgtgacttt
gtgaatgaggttaaaaatgaactatcaaaaccaggcttcaactcctttggtttgggggat
tgcaaagctcctaaagttcttggtgatattgttgaatcaattgctggggctatttttctt
gacagcaggtgtaatactaaagctgtatgggaggtttttcaaccgctgttgcatccaatg
gtcacaccagaaacactgccaatgcatccagttcgagaactgcaagagcgttgtcaacaa
gaagctcaagggttggagtacaaagcaactcgaagtgggaatatggctacagttgaagta
tatgtggatggtcttcaggttggaatggcgcagaatcctcagaagaaaatggcacagaag
ttggctgccaggaatgcccttgttgtgttgaaagagagggaggagattgaagctaagaag
gctgatgatggaaataaaaagaagaatggaaacccaagttttactaggcagacactgaat
gatatatgcttacgcaaaaattggcctatgccactgtatcgatgtgtgaacgaaggtggt
cccgcgcatgcaaagaggtttacatatggtgtacgcgtaaatactcaagtcgaaggattt
acagatgaatgtatcggggaacctatgcctagtgtaaagaaagctaaggattccgcggca
gctcttcttttggaactgttaaatagacggtactcctaa
DBGET
integrated database retrieval system
