Capsicum annuum (peppers): 107845325
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Entry
107845325 CDS
T04646
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107845325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107845325
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107845325
mRNA degradation factors
5'-3' decay
Decapping complex
107845325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Sey1_3HB
EIF3I
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
107845325
NCBI-ProteinID:
XP_016545070
LinkDB
All DBs
Position
10:992471..1004028
Genome browser
AA seq
1394 aa
AA seq
DB search
MASAGNPNQSGGGPPPPPYDIHKFFNPQQQPISAIPNSQNLISSYPPAGVGTGAGVVAGV
GTGAGGLYYPTSTPPFHHIPQRSISFPAPPLQPPATTPTSPHQFLNPNPGVRLMALLSAP
PLTNEVSQVSQQPILQNSGSEVSEFGAVSPSVGVGGISSPMMRMLSSTKLPKGRHLNGDH
VVYDIDVRLPGEVQPQLEVTPITKYGSDPGLVLGRQIAVNKSYICYGLKLGAIRVLNINT
ALRSLLKGLSQRVTDMAFFAEDVHLLASASVDGRVYIWKISEGPDEEDTPQITGRIVTAV
QVVGEGASVHPRVCWHCHKQEILVVGIGKHVLKIDTTKFGKAEVFSADEPLRCPVDKLID
GVQLVGTHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKPQPIAILRPHAGNPVNSAT
FLAAPDRPDHIILITGGLLNREMKIWVSASEEGWLLPSDAESWHCIQTLELKSSAEARAE
ETFFNQAAALSQAGLLVLANAKKNAIYVVHLEYGLNPMATRMDYIAEFTVTMPILSFTGT
SDLLPHGEQIVQVYCVQTQAIQQYALDLSQCVPPPMENAVGFERTESNVSRDAASIEGYL
PVDPPGSKLMEFPLTSSAPKSLVHESGTELVASTRPSTTDAHTASVTSVEFASSVTESKS
ASLPSITTDTDIAPFASPPPPLSPELAKKLSGFRSISNSSEPGPSVSDHFGDPKAVEYSV
DRQMDAIHPNLTGLTSSDGDPMNNEDEVTRDDGSSGISNPIKFKHPTHLVTPSEILLANS
SSEVNHVNEHKSEGESSIQDVVINKETSNVEVEVKVVGETRFSQKTDIGSQEDLHPFVSE
NKGKPFCSQASDLGREMARECRALSPKTYIIQESRQLDGASETEQLTQTSTAPEEDRDSA
KEISGKNLDSSLQVSAHQPPPYSAKAKKQKAKNTQGFEPALSSPGDFNSSDSNEGGVSAS
NASMEAAVSQILSMHEKLNQVLNMQKETQKQIGMMVAVPVTKEGRRLEAALGRSMEKAVK
ANSDALLARFQEEGAKQEKLLRDRTQQISNLISNCFNKDMPGLIEKVMKKELAAVGQAVT
RSIVPAIEKAVSTALSEAFQKGVSDKAVNQLEKTVSSKLEASVARQIQSQFQISGKQALQ
ETLKSTMEGSVIPAFEMSCKAMFEQVDSTFQKGFAEHTTSALQQFESMHSPLVHALRDAI
NSASSMTQTLSGELADGQKKLLTLAVSGANSKSLNPLVSHMSNGPLLHEKLEAPADPTKE
LSRLLVERKYEEAFTAALQRSDVSIVSWLCLQVDLPVILSMNPLPLSQGVLLSLLQQVAC
DITKETTRKLSWMRDVLSAINPTDPMIAVHVRPIFEQVYQILNHHRSLPTTTPAEISSIR
LLMHVINSMLMTCK
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgccggaaatcctaaccagtccggtggaggaccaccaccaccaccgtatgat
attcacaaattcttcaacccacaacaacaaccgatttcagcaataccaaattcccagaat
ttgatttcttcatatccacctgccggagttggcaccggcgccggagttgtcgccggagtt
ggtaccggtgccggtggactctactacccaacctctacacccccttttcaccatatccct
caaagatccatatctttccctgcacccccacttcaacctcctgctaccaccccaactagt
ccacatcaattcttgaatcctaaccctggggttcgtttaatggctttgttgagtgcacca
ccattgacaaatgaagtttcccaagtttctcaacaacccattttgcaaaattcagggtct
gaggtatctgaatttggtgcagtttcacccagtgttggtgttggtggtattagtagtccg
atgatgcgaatgctgagtagtactaagttacctaaagggagacatttgaatggtgatcat
gttgtttatgatatagatgttaggttgcctggtgaagtgcagcctcagttggaggttaca
cctattactaagtatggttcggatccgggacttgttttagggagacaaattgcagttaat
aagagttatatatgttatggacttaaattgggagctattcgtgtgcttaatattaatacc
gcgttgagatcattgcttaaaggtctttcacagagggttacagacatggctttctttgct
gaggacgttcaccttttggccagtgcaagcgtcgatgggcgtgtttatatatggaaaatt
tctgaaggacccgatgaggaagatactccccaaattacagggaggattgtcactgctgtt
caagtcgttggtgaaggggcatctgttcatcctcgagtttgttggcattgtcacaaacaa
gaaattcttgtggtcgggatcggaaaacatgttttaaaaattgataccacaaaatttgga
aaagctgaagttttttcagcagatgaacctctcagatgtcctgttgacaagttgattgat
ggggtacaacttgttggtactcatgatggagaagtgactgatctgtcaatgtgccagtgg
atgaccacccgattggtatctgcatcagtggatggcacgataaagatttgggaagaccgg
aagccacaaccaattgcaattctcaggcctcatgctggtaatcctgttaattcagcaacc
ttccttgctgctccagaccgcccagaccacatcatactcatcactgggggtttacttaat
cgggaaatgaagatatgggtatcagcaagtgaagaaggctggttgcttcctagtgatgct
gaatcatggcactgtatacaaacattggagttaaagagttctgctgaagctcgtgctgaa
gagacattctttaaccaagctgcagccttgtctcaagcaggtctgctcgtactagcgaat
gcaaaaaagaatgccatatatgttgttcatctagagtatggtctgaacccaatggcaacc
cgtatggattacatagctgaatttacagttacaatgccaattttgagtttcactggaaca
agtgatttactgcctcatggtgaacagattgttcaggtgtactgtgtacagacgcaggct
attcagcagtatgctttggacttatcccaatgcgtgccacctcccatggagaatgctgtg
ggtttcgaaaggacagagtctaatgtttcacgtgatgctgctagtattgaaggatatctt
cctgttgatcctcctggtagtaaactaatggagtttcctttaactagttctgcacccaaa
tctttagtgcatgagagtggcacagagcttgtagcatcaactagaccttctacgactgat
gcacatactgcatcggtcacctctgtggaatttgcttcttcagtcacggaatctaaatca
gctagtttacccagtataactactgatactgatattgctccctttgcatcaccaccacca
cctttgagtcccgagttggctaaaaaactttctggtttcagaagcatatcaaacagctct
gagcctggtccctctgtcagtgaccattttggggatcctaaggctgttgaatattcagtt
gacaggcaaatggatgccattcatccaaacttgactggccttacttcgtcggatggtgac
ccaatgaataatgaagatgaagtgacacgtgatgatggttcttcgggtattagtaatcca
attaaattcaagcaccctactcatctggtgactccttcggagatattgttggctaactcg
tcctctgaggtaaaccatgttaatgagcataaaagtgagggagaatcgagtatccaagat
gttgtaatcaacaaggaaaccagcaatgtggaggtggaggttaaggttgttggtgaaaca
agattcagtcaaaaaactgatattggctctcaagaagaccttcatccttttgtgtcagaa
aacaaggggaaacccttttgctctcaggcatctgatctcggaagagaaatggctcgagaa
tgtcgtgccttatcgcctaaaacctatattatccaggaatctaggcagcttgatggggct
tctgaaactgagcagctgacccaaacatcaactgcccctgaagaagatcgtgactctgcg
aaggagatctctggaaagaatttagactcaagtctgcaagtttctgctcatcaacctcca
ccttatagtgccaaagcaaaaaaacaaaaggcaaagaacactcaaggatttgaaccagct
ttatcctcacctggtgatttcaactcatctgattccaatgagggtggtgtcagcgcaagt
aatgcctctatggaagctgcagtctcacaaattttgtccatgcatgagaagctaaatcag
gttcttaatatgcaaaaagaaacgcaaaagcagataggtatgatggttgctgttccagtt
accaaagaaggaagaagacttgaggctgccttgggacggagcatggagaaggctgtcaag
gccaattctgatgctttattggcccgttttcaagaagagggtgcaaaacaagagaaatta
cttcgtgatcgtactcaacaaataagcaatttgatatctaactgctttaacaaggacatg
ccggggctaatagaaaaagtaatgaagaaagaactagcagctgttggacaagccgtcaca
cgcagtattgtccctgccattgagaaagctgtatcaactgctctttcagaagccttccag
aaaggagttagtgacaaggcagtgaaccaactggagaaaacggttagctccaaacttgaa
gcttccgtcgctaggcaaattcagtcgcaattccagatctctggcaagcaagctcttcag
gaaactttgaaatctacaatggaaggttcggtgatccctgcctttgagatgtcatgcaag
gctatgtttgagcaagtagattcaacgtttcagaaaggatttgctgaacacactacttct
gctctacagcaatttgagtccatgcattcaccgttagtacatgctttacgggatgccatc
aattccgcatcatcgatgactcaaacattgagtggagagctagctgatggtcaaaagaag
ttgcttacgcttgcagtttcgggagcaaattccaagtcattgaatccattggttagccac
atgagtaatggaccattactgcatgagaagcttgaggctccggctgatccaaccaaggag
ttatctagattgttagtggagcgcaagtatgaggaggcgttcactgcagccttgcaaaga
agcgatgtgtctattgtatcgtggttatgtttgcaggttgatctaccggttatcttatcg
atgaatcctctcccgttgagtcaaggagtacttctttcacttcttcagcaggtggcttgt
gatatcaccaaggagacaacccgaaagttatcctggatgagggatgttctatcagcgata
aatccaactgacccgatgattgcagtgcacgtgcggcctatctttgagcaagtatatcaa
atcctaaaccatcatcggagtctccccaccacgacccccgctgaaatttcaagcattcgt
ctgctcatgcatgttatcaactccatgcttatgacctgtaaatga
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integrated database retrieval system
