Capsicum annuum (peppers): 107845503
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Entry
107845503 CDS
T04646
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03013
Nucleocytoplasmic transport
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107845503
03015 mRNA surveillance pathway
107845503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107845503
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107845503
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_ACIN1
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
107845503
NCBI-ProteinID:
XP_016545348
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All DBs
Position
10:complement(691956..699120)
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AA seq
428 aa
AA seq
DB search
MAKPGRGRAASPSGSSSRSRSRSYTPSDSRSSSSRSPSRSRSRSRSISSSSSASRSASSR
SPTPPPRLPPPPPPPARSPAGASKRGRSPPLPPPPESKKASPPPRKVSPIPESRVIHVDQ
LSRNVNENHLKEIFGNFGEILHVQLAIDQVVNIPKGFAYVEFKTRIDAEKAQLYMDGAQI
DGKVVHARFTLPERKKAASPPKAVATSSRRDAPRTDNVPVDVEKDGKKRQQELSPRRKPA
SPPQRSPIGRRGSPRRGLDSPVRRRVDSPIRRRANSPFRRGSPPPPRRRPGSPIRRRSPS
PPPRRHRTPPSRGSPRRIRGSPVRRRSPLPPRRRSPRRARSPPRRSPIGRRSSRSPIRRP
IRSRSRSISPRRGRGPAARRGRSSSYSSSPSPRKGPRKISRSRSPRRRPLRGRSSSKSDS
SSSPPRRP
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaggtagaggccgtgcggcttcaccatcaggctcatcttctcgctctcga
tctcggtcttacactccttcagactcgcggtcttccagttcgcgttctccgtctcgatct
agatctcgttctagatcaatttcttcgtcttcttctgcttctcgaagtgctagttcacgt
agtcctacacctcctcctcgccttcctcctcctcctcctccgccagctcgaagtcctgct
ggagcatcaaagcgaggccgctcaccgccactgccaccgccaccagagtctaagaaagct
tccccacctccaaggaaagtatctcctatacctgagtcgcgtgtgattcatgtggatcag
ctcagcaggaatgttaatgaaaaccatttgaaagaaatatttggtaattttggtgaaatt
ctgcatgtgcagttggccattgatcaagttgttaatattccgaaagggtttgcttatgtt
gagttcaagactagaattgatgctgagaaagcccaactatacatggacggtgcacagatt
gatgggaaagtagttcatgccaggttcaccctgccagagcgaaagaaggctgcctcacct
ccaaaggctgttgcaacttcctcgagaagagatgctccaagaactgataatgtccctgtt
gatgtggagaaagatggaaaaaaacggcaacaagagttgtctcctcgtcgaaaaccggcc
tctccaccgcagaggtctcctataggacgaagaggatctcctagacgtgggctagattct
cctgttcgtcgacgtgttgactctcctattcgccgccgagcaaattctccttttaggcgt
ggcagtccaccgcccccaaggaggaggcctggatctcccattagacgccgttcaccatcc
cctccaccaagacgtcatcggacacctcctagcaggggctctcccagaagaattcgtggc
agtcctgttcgtagacgttctccacttccaccaaggcgacgttctccacgacgtgctaga
agtccacccagaagatctccgattggtcgtcgatctagccgttcacctattaggaggcct
atccgttcacgatcaagatccatctctcctaggcgaggaaggggtccagctgcaagacgt
gggaggtcatcgtcctattcttcttctcccagtcctcgcaagggtccccgcaagatttca
aggagccgcagtcctagaaggaggcctttaagagggaggagctccagcaagagtgacagc
agcagttcgcctcctcgtaggccctaa
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