Capsicum annuum (peppers): 107846195
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Entry
107846195 CDS
T04646
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107846195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107846195
03012 Translation factors [BR:
cann03012
]
107846195
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107846195
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107846195
Translation factors [BR:
cann03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107846195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
SR-25
AAA_19
Cas3-like_C_2
NACHT
Motif
Other DBs
NCBI-GeneID:
107846195
NCBI-ProteinID:
XP_016546131
LinkDB
All DBs
Position
8:37809835..37821582
Genome browser
AA seq
1034 aa
AA seq
DB search
MSLRLLNPHYSSALLHFHHFRNALHSSAQRNSYTFTRSVFMSYHPNYRGGRRGGGGGSGR
GRGGGRGGGRGGGGGGEQRWWDPVWRAERLRQQAAEMEVMNENEWWGKMEQFKRGGEQEM
VIRRNFSRDDQQKLSDMAYQLELYFHAYNRGKALVASKVPLPSYRADLDERHGSTQKEIR
MSTEIEERVGNLLSSSQDTVAAGTSSSISGNSAQLSSKAVETAKPKLTLEDDTATKRLNM
ELKQKQENKRESEKVKAMISFREKLPAFKVKSEFMEAVANNQVLVVSGETGCGKTTQLPQ
FILEEEISSLRGADCNIVCTQPRRISAISVAARICSERGENLGDTIGYQIRLESKRSAQT
RLLFCTTGVLLRRLVQDPDLTGVSHVLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM
SATINAELFSKYFRDAPTIHIPGLTYPVAELFLEDVLEKTRYLIKSEADNFQGNSRRRMR
QQDSKRDPLTDLFEDVDIGSHYKGYSMTTRQSLEAWSGSQLDLGLVEAAIEFICRHEGEG
AILVFLSGWDEISKLLEKIKANNFLGDSRKFLVLPLHGSMPTVNQREMFDRPPANTRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKLVHDGMAQYQLPEILRTPLQELCLHIKSLQFGAIESFLAKALQPPDALSVH
NAIELLKTIGALDDTEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPALTIAAALAHR
DPFVLPINRKEEADAAKRSFAGDSCSDHIALLKAFEGWKDAKRNGKERAFCWENFLSPVT
LQMMEDMRLQFVDLLSDIGFVDKSRGPKAYNEYSNDLEMVCAILCAGLYPNVVQCKRRGK
RTAFYTKEVGKVDIHPASVNAGVHLFPLPYLVYSEKVKTTSIFIRDSTNISDYSLLMFGG
NLTPSKSGDGIEMLGGYLHFSASKSVLDLIKKLRGELDKILKRKIEEPRFDISVEGKGVV
AAVVELLHSQDIRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtcattgcgcctactaaacccccactactcctccgcacttctccattttcaccacttc
cgtaacgctcttcattcatcagctcaaaggaatagttacactttcacccgttccgttttt
atgtcttatcatcccaattaccgaggcggtcgccgtggcggcggcggtggtagtggaaga
ggacgtggtggtggtcgtggaggaggacgcggtggtggtggtggtggtgaacagaggtgg
tgggatcctgtatggcgtgctgaacgccttcggcaacaggcagctgagatggaggtgatg
aatgagaatgagtggtgggggaagatggagcagtttaagagaggaggcgagcaggaaatg
gtaataaggcggaattttagtagggatgaccagcagaagttgtctgatatggcttatcaa
ttagaactttacttccatgcttataacagaggaaaggcgcttgttgcaagcaaagtccca
ttgccaagctatcgtgctgatcttgacgagcgtcatggatctacacagaaagagatcagg
atgtctacagagattgaggaaagagtcggaaatctattgagtagttcacaagacacagta
gctgctgggacgtcctcttcaatatctggtaattctgcccaattatcgtccaaagctgta
gaaacagccaaacctaagttgactttagaggatgatactgccaccaaaagacttaatatg
gaacttaagcagaaacaggaaaataagagggaaagtgaaaaggtcaaggcaatgatctca
ttcagagaaaaacttccagcatttaaagtaaaatctgaatttatggaagctgttgcaaat
aatcaggtattggtagtttctggagagactggttgtggaaagactacacagctccctcaa
tttattctagaagaggagatatcatcccttcgtggtgctgactgtaacatcgtatgcact
cagcctcgccgtatatctgcaatatcagtcgccgctcgaatatgctctgagagaggagag
aatctcggtgatactattggataccagatccggctggaatcaaagcgctctgctcaaaca
cggttgttattttgcacaacaggagtgttactgcggcggctggttcaggaccctgatttg
actggtgttagccatgtgcttgttgatgaaatccatgaaagaggcatgaatgaagatttt
ctcttgataattttacgtgacctccttccacgacgacctgatttgcgtctcattctgatg
agtgctactattaacgctgagttgttctccaaatacttcagagatgcacccacgattcat
ataccgggtttgacatatccagtggcagagctgtttcttgaagacgtgttggagaagact
cgttacctaataaaatccgaagcagacaatttccaagggaactcaaggagaaggatgagg
caacaagattctaaaagagatcctctgactgatctttttgaggatgtggacattggttcc
cattataaaggctacagcatgactacaagacaatctctggaagcatggtctggttcacag
cttgatttgggtcttgtggaagcagcaattgaatttatttgtcgccatgaaggtgaaggt
gcaattcttgtattcctatctggttgggatgaaatttctaagctgcttgagaaaattaag
gctaacaacttccttggggactccaggaagtttttagtcctccctcttcacggttcaatg
ccaacagtaaatcaacgagaaatgtttgatcgcccacctgctaacacaaggaaaattgtg
cttgcaaccaacatagctgagagcagtataactatagatgatgttgtgtatgtcatagat
tgtgggaaggcaaaagagactagctatgatgcacttaacaagttagcttgtttattacca
tcatggatttcaaaggcatcggcacatcagagacgtggtcgtgcaggccgtgtacaacct
ggagtttgttataggttgtatccgaaactagtacatgatggtatggcacaatatcaacta
cctgagattcttcgaacaccattacaagagctttgtctccacattaagagtttgcagttt
ggcgccattgaatcctttttggccaaggcacttcaacctccagatgctctctctgtccac
aatgccattgaacttcttaaaactattggagctctggatgacacagaagaacttactcca
cttggccgccatctttgcactctaccgctggatccaaatattggaaagatgcttctaatg
gggtccatcttccaatgtctgaaccctgcactgactattgctgcagctcttgcacaccgt
gatccatttgttcttccaataaacaggaaagaggaagcagatgctgctaaaagatccttt
gctggtgattcttgcagtgatcatattgcacttcttaaagcatttgaaggatggaaagac
gctaaacgtaatgggaaagaaagagccttctgttgggaaaatttcttatctcctgtaacc
ttgcagatgatggaagacatgagacttcagtttgttgacctgctgtcagatataggtttc
gtggataaatcacgaggacccaaggcatacaatgaatatagcaatgatttagagatggta
tgtgccatcctttgtgcgggtctctacccaaatgtcgtgcagtgtaaaagaagaggaaag
cgtacagcattttacacgaaagaagttggaaaagttgatatccatccagcatctgttaat
gctggtgttcatcttttccctcttccctacttagtttacagcgagaaagtcaagaccacc
agcatttttatcagagattcgactaacatatcagattattctcttctcatgtttggggga
aatctcactccgagcaaaagtggagacggcattgaaatgcttggaggctatcttcacttt
tctgcatcgaaaagcgtgttggatttaataaagaaactgagaggggaactggataaaatc
ttgaaaaggaaaatcgaagagccccgctttgacatttcagtcgagggaaagggtgtagtt
gctgctgtagtcgagttacttcatagtcaagacatacggtactaa
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