Capsicum annuum (peppers): 107847846
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Entry
107847846 CDS
T04646
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107847846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107847846
Spliceosome [BR:
cann03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107847846
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
107847846
NCBI-ProteinID:
XP_016547876
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Position
11:complement(232604471..232610097)
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AA seq
791 aa
AA seq
DB search
MEKEKSKEKSRRDYGDKYHHSSSKDKKHYEDDHDHRHRSSKHRSEREGSRDRGRDYHDRK
RKERSVSVEDRSSNGDEKKRPRVSDDGDRRRDKEDEGSRRERRRRFEDKAAAKEGDPTAD
DAPFGSIAKGVTMESYNVTPRTLSDNSLGHGDSPVTKVSLLSTENKGVNINGSHQVPEKS
STDGTASGAGKSGSLSLDALAKAKRALQMRKELAEKLKKIPALNKNKGPSFTGEELPQVG
PKERLQPSANAGIFPTPVASSDAGVLPTPGSAPGTSILATAASTNQPPSGLPHLVGLTAQ
KYEAVKRAQELAAKMGFRQDPEFAPLINMFPGQMAPEATLQSKPAKAPVLRLDALGREID
EQGNIVNMPKPSSTLKVNINKKKQEAFQILKPEFEVDPEKNPHFDPAMGIDKNKILRPKR
MTFQFVEEGKWSRDAEIIKLKSQFGEARERELKAKQAQLTKAKAEPDINPNLIEVSERVI
TKEKQKEPIPEVEWWDAPLLRTGTYGDVVDGIVTNEQLKFEKITIYVEHPRPIEPPAEPT
PPPPQPLKLTKKEQKKLRTQRRLAREKERQEMIRQGLVEPPKPKVKMSNLMKVLGSEATQ
DPTKLEMEIRSAAAEREQAHVDRNIARKLTPDERREKKERKLFDDPNIAPETIVSVYKIN
DLSHPQTRFKVDVNAQENHLTGCAVISEGISVVVVEGGKKSIKRYGKLMLRRIDWAAASK
KEDDEGEGEDEDDDKPLNKCVLVWQGSVAKSSFNRFFVHDCRTEAAARKVFADAGVPHYW
DLAENFKDDEF
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagagaaatcgaaagagaaatcaaggagggattacggagacaaataccaccat
agcagctcgaaggataagaagcactatgaagatgaccatgaccatcggcatcgtagttcc
aaacatagatccgaaagagagggaagccgagacagaggtcgtgattatcacgataggaag
aggaaagagcggtcagtaagtgtggaggatagaagtagtaatggggatgagaagaagaga
cctagggtttctgatgatggagatcggaggagggataaggaggatgaggggagtagaaga
gagaggagaaggaggtttgaggataaagcagcagctaaggaaggtgacccaactgctgat
gatgctccttttggttccattgctaagggtgtgacaatggaatcatacaatgtgacacca
aggactttgtctgataacagcttgggtcatggtgattctccagttaccaaggtatctttg
ctttctactgaaaataagggagttaatattaacggatctcatcaggttcctgagaaatct
agtacagatgggacagcttctggtgctggcaagagtgggagcttatcccttgatgcttta
gcaaaagcgaagagagctttacaaatgcgaaaggagttggctgagaagcttaagaagata
cctgcattgaacaagaacaagggtcccagctttactggagaggaacttccacaggtggga
cccaaggagaggcttcaaccttcggctaatgcaggaatttttcccactccagttgcatct
tcggatgcaggggtattgccaactcctggttcagcaccaggcacatcaattttggctact
gcagcttctacaaatcaaccacccagtggtttgcctcatcttgtggggctgacagcacaa
aaatatgaagcggtaaaacgtgcacaggagcttgctgctaaaatgggattccggcaggac
ccagagtttgctccactcataaacatgtttcctgggcaaatggcaccagaggctaccctt
cagtcaaaacctgcaaaagcccctgttcttcgattggatgccctaggcagggaaatcgat
gaacagggaaatattgtcaatatgcctaagccatctagcacccttaaggtgaacatcaat
aaaaagaaacaagaagcatttcaaattctcaaacctgaatttgaggttgatcctgagaaa
aatcctcattttgatccagccatgggcattgacaagaacaaaattttgaggcccaagagg
atgacgtttcagtttgtggaggaaggcaaatggtccagagatgcagaaataatcaagtta
aagagccaatttggtgaagcaagagaaagagagctaaaggcaaagcaagcacagttgacc
aaggctaaagcagagcctgacataaatccgaatctcattgaggtatcggaaagggttatc
accaaggaaaaacagaaggaacctattcctgaagttgagtggtgggatgctcctttgtta
cgaactggtacttatggggatgtagttgatggcatcgtaaccaacgaacagttgaagttt
gaaaagatcaccatatatgttgaacaccctcgccctattgagcctcccgctgaaccaact
ccacctcctccccaaccattgaaactaaccaagaaggagcaaaagaaacttcgaacccag
cgaagactggcaagggagaaagaaagacaagaaatgatacgacaaggcctggtagaacca
ccaaagccgaaagttaaaatgagcaatctaatgaaagttcttggctcagaagctacacag
gatcctacaaagcttgaaatggagattagaagtgctgctgctgagcgtgagcaggctcat
gtagacaggaatattgctcgtaagcttactcctgatgagcgtcgtgagaaaaaagagagg
aaactttttgatgacccaaacatcgctccggagactattgtttctgtatacaaaattaat
gacctctcccacccccaaactcgcttcaaagttgatgttaatgctcaggagaaccacttg
accgggtgtgcagtcatctcagaaggtattagtgttgttgttgttgaaggtgggaaaaaa
tcaatcaagcgatatgggaaacttatgcttcggagaatcgattgggcagctgccagcaag
aaagaagacgatgaaggtgaaggtgaagatgaagacgatgataagcctctcaacaagtgt
gtgttggtctggcaagggagcgttgctaagtcgagcttcaacaggttttttgttcatgac
tgcagaactgaggctgctgctcgtaaagttttcgctgacgctggggttcctcattactgg
gatctcgctgaaaacttcaaagatgacgaattttaa
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