Capsicum annuum (peppers): 107850354
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Entry
107850354 CDS
T04646
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cann03036
]
107850354
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107850354
microRNA pathway
RISC loading complex
107850354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
PAZ
ResIII
SWI2_SNF2
Cas3-like_C_2
Dicer_dsRBD
Maf_N
Motif
Other DBs
NCBI-GeneID:
107850354
NCBI-ProteinID:
XP_047256671
LinkDB
All DBs
Position
12:complement(9142696..9153864)
Genome browser
AA seq
1401 aa
AA seq
DB search
MEPSNVAVFENQQLSADPLPFARSYQLEALETALKQNTIVYLETGSGKTLIAIMLLRSYA
YLLRKPSPYIAVFLVPTVVLVTQQGDALMMHTDLKVGKYWGEMGVDYWNATTWQQQVDDH
EVLVMTPAILLAALRHSFLQIDMIKVIIFDECHNARGKHPYACIMREFYHHQLTRESAQL
PRIFGMTASPIKTKGSSTADSYWQTIRDLEDLMNSKVYTCSSESVLAEYVPFSNLKLKIY
KRVDNPCTLFLSLARDLKRLKEKHECSISKSNLSDMSARSARRRLSRLYSAFLFCLIEMG
AWLAFKAAEFFSRDETDFFCWRELDVCAQNIVRDFSLDSSKVFSAHLPSGPHWSIGGDIQ
ANVDAGYVSSKVHCLLESLLEYRDLKDLRCIIFVERIITAIVLRSLLNELLPELCGWRTE
YTAGHISRVQSQSRKVQNKIVEEFRKGLLNIIVSTSILEEGLDVQSCNLVIRFDPSATVC
SFIQSRGRARMQNSDFLLMVRSGDDSTLNRMQNYMASGEIMRQESLSHASIPCSPLDDEL
YGEPCYRVESTGAVVTLSSSVSLLYFYCSRLPSDGYFKPNPRCVIGKETGTCTLQLPKSC
PLQRIITVEGNSKILKQLACLVACKELHHVGALTDNLVPDILEEEAINEELESQFHTVEE
SKYFPPELVSHCGNDSEAVYYCYLIELQHDSYNDFQLHGIILAVRTRLKFDDEILAFELD
VDRMGCMQVQLNYSKVVTLTSEEIRRCQRFQVSVFRILLDRDLSKLADALAAVKSPIGSA
VSDYLLLPSLGATPEINWNCVNSLLFPSQVLGDRHMECCSTQGRQRRVNTKTGVVCRCML
ENSLVCTPHNGHVYCVTGFLDNLNCNSLLDMRTGESITYIEYYKKRHGIDICFEGESLLR
GEHIWKVHNYLQRWRIQKAKDSTDSSVELPPELCSLIMSPISISTLYTYACVPSIMHRIE
SLVMASNLKRMHLDHCTLDIFIPTAKVLEAMTTKKCLENFHLESLETLGDSFLKYAATIQ
LFKTYENHHEGLLTVKKNKIISNAALCRLGCARKIPGFIRNEPFDLKAWLIPGDNSQVHV
FDEEFLSSSDKIYSKGKLKIKSKGVADVVEALIGAYLSSGGEVAALSFMKWLGVDIDFVD
APSPRHFPMNAEKLVNVRYLENLLHYKFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLGD
AVLDYVVTAHLYFKYPGLTPGLITDLRSASVNNECYAQSAVKAGLHKHILHASQDLQRQI
FTTVEDFEKLDLVSTFGWEAETTFPKVLGDIIESIGGAIFVDSGFDKDTTFKCIRPLLEP
LVTPQTVKPHPVRELGELCGQNGYIKKNVVSRENGVAYITIEVEANGVIHKSTCSGRDKT
MAKKVASKNVLKSLKECPSNA
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggagccaagtaatgtcgcagtctttgaaaatcaacagctctccgctgaccctcttcct
tttgcgagaagttatcagttggaagccctggagactgcattaaagcagaataccattgtt
tacttggagactggttccggaaagaccttgattgcaattatgcttctcagaagctatgct
taccttctgcgaaagccgtctccgtacatagctgttttcttggtgccgactgttgttctg
gtgactcagcaaggagatgctctcatgatgcataccgatttaaaagtgggcaagtattgg
ggagaaatgggtgttgattactggaatgctactacatggcaacaacaagtggacgatcat
gaggtactggttatgactccggctatactacttgctgctttgaggcacagctttttacaa
atagacatgataaaagttataatctttgatgagtgccacaatgcacgaggcaaacatccc
tatgcctgtataatgagggaattttatcatcaccagttaacccgtgagagtgcacaactt
ccaagaatatttgggatgactgcttcccctataaagactaaaggttctagcacggcagat
agttattggcaaacgattcgtgacctcgaggatcttatgaattccaaggtatacacgtgc
agcagtgaatctgttctggcggagtatgtcccattctcaaatctgaagctgaagatatat
aaacgtgtggataatccttgcacattgtttcttagtttagctcgtgatctgaaaaggttg
aaagaaaagcatgaatgttcgatttcaaagtcaaatctgtctgacatgagtgctagatct
gcaagaagaaggttatcaagactctattcggctttcttattttgtttgattgagatgggt
gcttggctggcttttaaggcagctgagttcttttcccgtgatgaaactgacttcttttgt
tggagagaattagatgtatgtgctcagaatattgtgagagatttcagtttggattcatct
aaagttttctcggctcacttaccttctgggccgcattggtcaattggtggtgatattcag
gcaaatgtggatgctggatatgtgtcatccaaagttcattgtcttctagagtctcttttg
gagtacagggacctgaaggatttgagatgcatcatatttgttgagagaattattacagcc
attgttcttcggtctctattgaatgagttgcttccagaactctgtggttggagaaccgag
tatacagcaggacatatttctagggtgcagtcacaaagtaggaaagttcaaaataagatt
gttgaagaatttcgcaagggtctgttgaacattattgtatcgacatctattctggaagag
ggcttggatgttcaaagttgcaaccttgtcattcgatttgatccctcagctactgtttgt
agctttatacaatctcgtgggcgagctcgaatgcagaactccgactttcttctaatggtt
agaagtggagatgattcaacccttaatcgcatgcaaaactatatggctagtggggagata
atgcggcaagaatcattaagtcatgcttctattccatgttcacctctagatgatgaatta
tatggtgagccttgctacagagttgaaagcacgggagcagttgtcaccctcagttccagc
gtgtcattgttatacttttattgctcaaggctaccatcagatgggtactttaaacccaat
cctaggtgtgtgattggtaaggaaacaggaacctgtacgctacaacttcccaaaagttgc
ccactgcaaagaattattactgtagagggaaatagcaaaatattgaagcaacttgcatgc
ctggtagcttgtaaagaacttcatcatgtgggtgccttgactgataatcttgttcctgat
atcttggaggaagaagccatcaacgaagaactggaaagtcaattccatacagttgaagaa
tcaaagtactttccacctgaattggttagtcattgcggcaatgactcagaagcagtgtac
tactgctacctaattgagttgcaacatgactcttacaacgatttccagcttcatgggatt
atacttgctgttaggacaaggctcaagtttgatgatgaaatattggcttttgaattggac
gttgataggatgggatgcatgcaagttcaactaaattatagtaaagttgttacccttact
tctgaagagattcgacggtgtcagaggtttcaagtcagcgtcttcagaattcttcttgac
cgtgatttgagtaaactggcggatgctttggctgcagttaaatcgcccatcggttctgca
gtttctgattatctattgctcccgtctttgggtgcaacccctgaaataaactggaattgt
gtgaattcattgctgtttccttctcaagttcttggggataggcatatggaatgctgctct
actcaaggtcgtcaacgcagggtgaacaccaaaactggtgtggtatgtaggtgcatgttg
gagaactcattggtctgtacacctcacaatggccatgtatactgcgttaccggctttttg
gataatttgaattgcaactcattgttggatatgagaaccggagaatccattacctacata
gaatactacaaaaagcggcatgggatcgacatatgctttgaaggagaatcacttcttagg
ggggaacatatttggaaagtgcacaattaccttcaaagatggagaattcagaaggctaaa
gattcaactgattcatctgttgagttgcctcctgaactatgttccctcatcatgtcgcct
atctctatttctaccctttatacctatgcatgtgttccttcaatcatgcatcggattgag
tccttggttatggcctcgaacttgaaaagaatgcatttagatcactgcactctagatatt
tttattccaaccgctaaggttttggaagcaatgacgacaaagaaatgcctagagaatttt
catttggaatcacttgagacacttggggattcatttttgaaatacgctgccacgatacag
ctgtttaagacttacgaaaatcatcacgagggtcttctcaccgttaagaaaaacaaaatc
atttcaaatgctgcactttgcaggcttggatgtgctcgtaaaatacccggatttatccga
aatgaaccattcgatcttaaagcgtggctcattcctggtgataattctcaagtccacgtc
ttcgacgaagagttcctgtcatcttcagataaaatttatagtaaggggaaactgaagatt
aaaagtaagggagtagctgatgttgttgaggctctaataggtgcctacctcagctcgggt
ggggaagtagcagctttatcatttatgaaatggcttggggtggacatcgattttgtcgat
gcaccttcgccaaggcactttcccatgaatgctgagaagctagtcaatgttagatacttg
gaaaacttgctacattacaagttcaatgatccttctctgcttgttgaagccctaactcat
ggatcttacatgctacccgagattccacggtgctatcagcggttggaatttcttggagat
gcagtgctagattacgtcgttactgcccatctctatttcaaatatcccggactgactcct
ggactaattactgatttaagatctgcctccgtgaacaatgaatgttatgctcagtctgca
gttaaggctggcctgcacaagcacatccttcatgcctcgcaagatctgcagaggcaaata
tttactactgtagaggattttgagaaattggatcttgtgtccacgttcggatgggaggct
gaaacgactttcccaaaggtgcttggagatattattgagtccattggtggtgcgatcttt
gttgattctggcttcgacaaagatactacatttaagtgcatacgacctcttctggaaccg
ttagttacaccccagacagtaaaaccccacccagtaagagagttaggtgaactatgtggc
caaaatggttatataaagaagaatgttgtctctcgtgagaacggtgttgcatatattacg
atagaggttgaagcaaatggtgttattcacaagagtacgtgctcgggacgagacaaaaca
atggccaagaaggtggctagcaaaaatgtgctcaagtcactgaaagaatgtccatctaat
gcttag
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integrated database retrieval system
