Capsicum annuum (peppers): 107850396
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Entry
107850396 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107850396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107850396
03009 Ribosome biogenesis [BR:
cann03009
]
107850396
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107850396
Spliceosome [BR:
cann03041
]
Complex A
U1 snRNP components
U1 related factors
107850396
Complex B
107850396
Ribosome biogenesis [BR:
cann03009
]
Eukaryotic type
Pre-60S particles
Helicases
107850396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107850396
NCBI-ProteinID:
XP_016550372
UniProt:
A0A1U8ET22
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All DBs
Position
12:105478720..105494249
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AA seq
501 aa
AA seq
DB search
MSRYDSRPTDPGSYRDRRSDWGFGGGSNFKSSSSSRKDYEGKESPRKVDLDGLTPFEKNF
YVESPSVAAMTESEVEEYRRRREITVEGRDVPKPVKSFHDVGFPDYVLQEIEKAGFTEPT
PIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVHVNAQPFLAPGDGPIVLVLAPTRE
LAVQIQQEATKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNNTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLFNAY
KVIIGSADLKANHAIRQYVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQVTRQ
LRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKFVINYDFPG
SLEDYVHRIGRTGRAGASGTAYTFFTAANARFAKDLVNILEEAGQKVSPELAKMGCGAPP
PPGHGGFRDRGRGYGGNRQWS
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctacgacagccgtccgaccgaccctggctcttaccgcgaccgtcgcagtgat
tggggcttcggtgggggctcaaattttaagtcatcatcatcgagcaggaaagattatgag
ggtaaggagtcgccacggaaggttgatttggatggattgactccattcgagaagaatttt
tatgttgaatcaccgtccgttgcggcaatgactgaaagcgaggtggaagagtatagacga
cgtcgggagatcactgttgagggtcgtgatgtgcccaagcctgtaaagtcgtttcatgat
gtaggatttccagattatgtcttgcaagaaattgaaaaggctggcttcactgaacctaca
cctattcaagctcaaggttggcctatggctttgaagggtcgtgacctcattggtatagca
gaaacagggtctgggaaaacaattgcttatctgttgcctgcaattgtgcacgttaatgcc
cagccatttttagcgcctggagatggtccaattgtcttagtgttagcgccaactcgcgaa
cttgctgttcagattcaacaggaagctactaaatttggtgcatcatcacggattaagaat
acctgcatttatggtggggtcccaaagggtccccaagttcgtgatcttcagaaaggtgtt
gaaattgttattgccacacctggacggttgattgatatgttagaatctaacaatacaaat
ctgcgaagagtgacatatctcgtgctggatgaggctgaccgcatgctagacatgggtttt
gaacctcagatccgcaaaattgtttctcagatacgcccagatcgtcaaacgctgtattgg
agtgccacgtggcccaaagaagttgaacagcttgcacgacaattccttttcaacgcatac
aaagtgatcattggttcagctgacctgaaagctaatcatgctattcgccagtatgtggat
attgtctcagagagccagaagtacaataaattagtaaagttgctggaagatattatggat
ggtagtcggattttaatattcatggacaccaaaaaggggtgtgaccaagtaactcggcag
ctccggatggatggttggcctgcactttctattcatggtgataagagtcaagctgaaaga
gattgggtcctttcagaattcaaagctggaaagtctcccataatgacagctacagacgtt
gctgctcgaggtctagatgtgaaggacgtaaaatttgtaatcaactatgattttcctgga
tcattggaggactacgttcatcgcattggtagaacaggaagggctggtgcctcagggaca
gcatacacattctttactgctgctaatgctaggtttgcgaaggaccttgttaacattctt
gaggaggctggccagaaggtcagtcctgaattggctaaaatgggatgtggtgctcctccc
cctccaggtcacggaggttttcgagaccgtggaaggggttatggcggcaacaggcaatgg
agctag
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