Capsicum annuum (peppers): 107850411
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Entry
107850411 CDS
T04646
Name
(RefSeq) transcription initiation factor IIF subunit alpha isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107850411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107850411
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
107850411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
DZR
Zn_ribbon_3
Zn_Ribbon_1
Motif
Other DBs
NCBI-GeneID:
107850411
NCBI-ProteinID:
XP_016550393
LinkDB
All DBs
Position
12:1659346..1668920
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AA seq
543 aa
AA seq
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MSIDLILKPSCSRCGSSSDLYGSSCKHLTLCLSCGKNMAETREKCYECGTPVTRLIREYN
VRACSSNDKNHFIARFASGLPKFSKKKSDSKWTLQKEGLQGRQVTDSLREKFKNKPWLLE
DETGQFQYHGHLEGAQSAHYYLLMMQGEELFAIPAGSWYNFNKVAQYKQLTLEEAEEKMK
NRRKTADGYQRWMMKAANNGPAAFGEVERFDDKEGGSGGTRGRKKASGDEDEGNASDHAD
EDEDEESARRNRLGLNKKDDDDEEGLRGGDLDLDDDDIEKGDDWEHEEIFTDDDEAVGND
PEEREDLAPEIPAPPEIKQTQDEDDEDEGEEEGGGGLSKSGKELKKLLGKANGLDESDAE
DDDDDDDTEEDISPVLAPKPKEAPKEEPVDTNSPLKPAASGSNRGTPSSKSSKTKRKATG
DESKPTNGAPLKKVKTETDAKPGKDDTPSTSKNSTPTAITKGASSSSRPAPTSATGPVTE
DEIRAVLLQRKPVTTQDLVSQFKSRLKCKEDKTAFADVLRKISKIQKTSSGSSYVVLRER
TNQ
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgatttgatattgaaaccgtcgtgtagcaggtgtggttcgtcgtcggatttg
tatggaagctcatgcaagcacttgactctttgtttgtcttgtggtaaaaatatggctgag
actcgtgagaagtgttacgagtgtggtactccagttacgcgattgattcgagagtataat
gttcgggcctgctccagcaatgataagaatcatttcattgctaggtttgcttcaggctta
cctaaattttcaaaaaagaagagcgatagtaaatggactttgcaaaaagaaggtttgcaa
ggacgtcaagttacagatagtttgcgggaaaagttcaagaataaaccatggctattagag
gatgaaactggtcaatttcagtatcatggtcaccttgagggagcacagtcagcacattat
tatctactgatgatgcagggtgaagagttatttgctattcctgctggttcttggtataac
ttcaacaaagtagcccaatataagcaacttactctggaggaagcagaagagaaaatgaaa
aatagaagaaaaactgcagatgggtaccagagatggatgatgaaagcagcaaataatgga
cctgctgccttcggtgaagtagaaaggtttgatgataaagaaggtggatctggtgggaca
agggggcgtaagaaagcgtctggtgatgaggatgaaggcaatgcgtccgaccatgcggat
gaagatgaggacgaggagtctgctaggagaaacaggttgggactcaacaaaaaagacgat
gatgatgaagagggtcttagagggggtgatcttgacctggatgatgatgatattgaaaaa
ggggatgactgggagcatgaggagatttttacggatgatgatgaagctgttgggaatgat
cctgaggaaagggaagatttggctcctgaaattcctgctcctccagagattaagcagacc
caggatgaagatgacgaggatgaaggtgaagaagagggaggagggggtttgagcaaatct
ggaaaagagttgaaaaagttgcttggaaaagccaatggattggatgaatcagatgctgag
gatgacgatgatgatgatgatacagaagaggatatttcacctgtattagctcctaagcct
aaggaagctcctaaagaagaaccggttgataccaacagtcctttgaaaccagctgcttct
ggatccaaccgtggaactccatcttcaaagtcatctaagactaaaagaaaagctactgga
gatgagtcaaaaccaactaatggtgctcccttgaaaaaagtgaaaacagagacggatgcc
aaacctgggaaagatgatactccatctacttcaaagaacagtactccgactgctatcaca
aagggtgcatcatcctcttccagacctgctccgacttctgccacaggtcctgttactgaa
gatgaaattagagctgttctgttgcagagaaaaccagtgaccacacaggatcttgtcagc
caatttaaatctcgtttgaaatgcaaagaggataagactgcttttgctgatgtattgagg
aagatctccaagatacagaagacttcttcaggaagtagctatgtcgtgttacgagagagg
acaaatcaatag
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