KEGG   Capsicum annuum (peppers): 107850698
Entry
107850698         CDS       T04646                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03420  Nucleotide excision repair
cann04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107850698
  09124 Replication and repair
   03420 Nucleotide excision repair
    107850698
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cann04121]
    107850698
   03400 DNA repair and recombination proteins [BR:cann03400]
    107850698
Ubiquitin system [BR:cann04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107850698
DNA repair and recombination proteins [BR:cann03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      107850698
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_Nup120_160 WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_LRRK2 Beta-prop_WDR11_2nd Beta-prop_WDR75_2nd Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 107850698
NCBI-ProteinID: XP_016550889
LinkDB
Position
12:210984595..210997024
AA seq 453 aa
MWKEIGDREFGKLRTNLFSNRIKSARISSIQLSNYKDFISPHRGSINSLQVDLTEGRYLL
SSASDTSVAVYDVQRATDYDESGLIAKHKHILLVDKQHEQGHKYAISTAIWYPIDTGLFI
TGSYDHYVNVWDTNTTQVVINFKMPGKVYKTAMSPVATSHMLIAAGTEDVQVRLCDISSG
AFAHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSHSQLGSRP
TILTRSTANKSSMLKTSSGGLNSSTKGRPSQKKMGNGVSLKHAAIARQVRGYGKQRLHPG
MLSSQDRATAHYGAVNGLKVTNDGMYLLSAGSDSRLRLWDIESGCNTLVNFETSRLQSTK
ALQLAISHDSKLVFVPCMSTTKAFDLWSGKTMMDLRGHYENVNCCLYNSLDQELYTGGND
RKILVWSPSKTTADELEGRDGQAFAIDQDNWSD
NT seq 1362 nt   +upstreamnt  +downstreamnt
atgtggaaggagatcggagacagagaatttgggaagcttcgcactaatttattcagcaat
cgtattaagtcggctagaatctcttctattcaactctccaactacaaagatttcatttct
cctcaccgtggctccatcaactccttacaggttgatttgacagagggccgatatctgtta
tcctctgcttcggatacatcagttgctgtttatgatgtccaacgtgcaactgattatgat
gaaagtggtctgattgcaaagcataagcacatattgttggttgacaagcaacatgaacag
ggccacaaatatgccatttccacagccatctggtatccaattgacacagggctttttatt
acaggctcttatgaccattacgttaacgtctgggatactaacacgacgcaggtggtaatt
aatttcaaaatgcctggaaaagtgtacaagactgccatgtcgccggtggcaacatcacac
atgttgatcgctgctggaactgaagatgttcaagttcgtctttgtgatatttcttcgggt
gcatttgctcatacattatctggccatcgtgatggagtgatgtcagttgaatggtctgct
tctagcgagtgggttttggtaacagggggttgcgatggcgccattcgcttttgggacata
aggcgtgcaggatgttttcgtgttctagatcagtctcattctcagcttggaagtcgccca
actattcttacacgttccactgcaaacaagagttccatgctgaaaacatcttcaggaggc
ttaaattcatctacaaaaggccgtccatctcagaagaaaatgggaaatggtgtgagtctc
aaacacgctgcaattgctagacaagtgaggggatatggaaagcagcgactacatccaggg
atgctctctagtcaagatagagccactgctcattatggtgctgtcaatggattaaaagtg
accaatgatggaatgtatctccttagtgcaggttctgattcaaggttaaggttatgggat
attgaatctggttgcaatacactagtgaactttgaaacttcacgactacagtccaccaaa
gctttacagttggccatatctcatgattcaaaacttgtatttgtgccgtgcatgtcaact
actaaggcatttgatctgtggtccggcaagacaatgatggatttacgtggccactatgag
aatgtgaactgttgtctgtacaattcgctggaccaggaactatacacaggtggtaatgac
cggaaaattcttgtctggtctccaagtaaaactactgctgatgaattggagggtagagac
ggacaagcttttgcaatcgatcaagataattggagcgactaa

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