Capsicum annuum (peppers): 107851280
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Entry
107851280 CDS
T04646
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107851280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107851280
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107851280
Spliceosome [BR:
cann03041
]
Complex C
Other components
Step II factors
107851280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
HA2_C
AAA_19
IBR_1
ResIII
Helicase_RecD
HA2_N
ABC_tran
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
107851280
NCBI-ProteinID:
XP_016551719
LinkDB
All DBs
Position
12:complement(6281409..6288945)
Genome browser
AA seq
1711 aa
AA seq
DB search
MQKLVSCPVIRPGYGLHRNDPTRFYHTQQPNFTVQLVATPRHWKLSRDQLNNLIVNLTFS
PDNSSVFENENSTSFVLGTLSYVEWNHALDVMVKLWELRLSGRHCYNVSVKAKNVVLSDK
DELNERLKRVFLEKMRELVDGFVVEKWKRRLDFLVNEIGKIDFLLKKRNRLGVYSELLGR
KKGVEKERDLIKLRISEFKNGIKGLMDYLEGNNEELIKMFSLSEEIDWNKIHYFMMRECR
RLDDGLPIYGFRQQILQQIQCQQVTVLVGETGSGKSTQLVQFLADSGLAGDGSMICTQPR
KLAANSLARRVREESQGCYDDGWISCNPSYSSRRQSDSKMIFMTDHCLLQHYMGDKTLSK
ISCVIVDEAHERSLSTDLLLALIKSLLNQRADLKLIIMSATVDADQLSDYFFGCGTYHVA
GRTFPVDIRYVPCDSDVRPAVGAIASYVHDVIKMVTEIHRTEGEGAILTFLTSQSEVEWA
CERFQAPLAIALPLHGKLSYEDQNRVFLSYVGRRKVIFSTNLAETSLTIPGVKYVVDSGM
VKESRFEPGSGMNILRICSVTQSSANQRAGRAGRTEPGKCYRLYSQNDFESMPRHQEPEI
RKVHLGVAVLRILALGIKNVQDFDFVDAPSPKAIEMATRNLVQLGAVRQKDDACELTAEG
LKLVKLGIEPRLGKMILCCFDQNLSKEGVVLAAVMANFSSIFCRVGSVGEKLQSDRRKVQ
FCHPNGDLFTLLSVYKEWEIVPREKKNSWCWDNSINAKSMRRCQETVLEMEACLLNELNM
ITASYWSWHPQGPNQYDKVLQSIILSSLAENVAVYSGYDQLGYEVALTGKCVQLHPSCSL
LNFNQRPRWVVFGEVLAAANEYLACVTAFEFSCLVSLNPAPLFDFLKMDAQKLEKKVLTG
FGVMLLKRFCGKFNSSINNLVSRIRTSCMDERIGIQVNVDENEVLLYASSRDMESVTCQV
NDALEYENKLLRNECFEKCLFSGGSAASASVALFGAGGVIKHLELEKRCLAVDIFRSKGN
AIDDKELLMFLERVTSGSICMVHKYTGIGQDNEENKWGTVKFLTPDAAERAIILNEVEFN
GGFLKMVPSRSTHGSDQKMFRSVLRAKVSWPRRYSRGIGFLKCDPREVALLVDELSDLPI
GEKLIRCNASDKYIDNIVITGLDRNVSEVEILEVLRAATNRRILDFFLLRGDCVENPPVA
TCEEALRKEISAFMPKRVPYVDSFRVQVFQPEPKECFTKASITFDGSLHLEAAKALEQIE
GIVLPGCLPWQKIRCQQLFHSSVSCPAPVYHVIRNQLDSLLARLRQNKDVNCKLERNANG
SFIVRISGTSTIAVAELRRPLELLMKGKIVEHVDITPTVVQLLFSREGINIMRTIHGETG
AYIHLDKHSLHVRIFGSSVNVDRAEQRFIDSLLVLHGRKQLEVHLRGGLLPPDLMKRVVT
AFGPDLSLLKEKVPGAEFSLNTKRHCICINGTKDMKQSVEDIISEIAQRSFSTQTTGDEA
HCPICLCEPEDAYRLEACTHAFCRSCLLEQCESVIKSREGFPMCCLSSGCGEPFLFADLK
SLLSTEKLEELFRASLGAFVTANAGTYRFCPSPDCPSVYRTADSDMEFGAPFVCDACNVE
TCTRCHLEYHPYLSCETYQKVKDNPDISVEEWSKGKDVQKCPVCSYVIEKVDGCNHIECR
CGKHVCWVCLLFFDSSDNCYEHLRSVHLSIT
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaactggtttcttgtccggtgatccgacccggatatgggttacaccggaatgac
ccgacccgtttttaccatacccaacaacccaatttcactgttcagcttgttgcaacacca
agacactggaaactaagcagagaccagctgaacaacttgatagtcaacttaacattttcc
cctgataattcatcagtttttgaaaatgaaaatagtaccagttttgtccttggaacattg
tcctatgttgaatggaatcatgcattagatgttatggttaagttgtgggaattaaggttg
tctggtagacattgttataatgtatctgttaaagcaaagaatgttgttttatctgataaa
gatgagttgaatgagaggttaaagagggtatttttggaaaaaatgagggaattagttgat
gggtttgttgtagaaaaatggaaaagaagattggattttttggtgaatgaaattggaaaa
attgattttttgttgaaaaagagaaatagacttggagtttattcagaattgttggggaga
aaaaagggtgttgaaaaagaaagagatttgattaaattaaggattagtgaatttaagaat
gggattaagggtttaatggattatttagaagggaataatgaagagttaattaaaatgttt
agtttaagtgaagaaattgattggaataaaattcattattttatgatgagagaatgtaga
aggcttgatgatggattaccaatttatggtttcagacagcaaattcttcaacaaattcag
tgtcaacaggtgacggttttggttggagagactggatcaggaaagagtacacaattagtg
caattccttgctgattcaggattagctggcgatggttctatgatttgcactcagcctcgg
aaacttgctgccaactctttagcaagaagggttagagaggaaagccaggggtgctacgat
gatggttggatctcctgtaatccatcatattcatcccgtcgacagtctgattcaaagatg
atttttatgacagatcactgcctattacagcactatatgggtgacaagaccttgtccaag
atttcatgtgtcatagtcgatgaggcacatgaaagaagccttagcaccgatcttcttttg
gcattgattaagagtttacttaatcagagggctgatctgaagcttattattatgtctgcc
acagttgatgcagatcagctttcagattacttctttggttgtggaacttaccatgtagcg
ggtagaacttttccagttgatattagatatgttccctgcgactctgatgtccgtcctgct
gttggtgcaattgcctcttatgtccatgatgttatcaagatggtgactgagatccataga
actgagggagagggagctattctaaccttcttgacatctcagagtgaagttgagtgggct
tgtgagaggtttcaagcacctctggcgattgctttgcctttacacggcaaattatcctat
gaggaccaaaatcgagtgtttctctcctatgtggggaggagaaaggttatattctccacc
aatcttgccgagacatcactgacaatccctggtgtcaaatatgttgtagattccggcatg
gttaaagaaagcaggtttgaacctggcagtggcatgaatattctcaggatatgcagtgtg
acccagagttcggctaaccaaagagctgggcgtgcagggagaactgaacctggaaagtgt
tacaggctgtactctcaaaatgattttgagagtatgcctcgccatcaggagcctgaaatt
cgcaaagttcatcttggtgttgcagtgctgaggattcttgctttaggtatcaagaatgtg
caggattttgattttgttgatgcaccaagccccaaggctattgagatggccacccgaaat
ctggttcaactaggagctgttagacaaaaagatgatgcatgtgaattaactgcagaagga
ctaaaactggtcaagttgggtattgaacctcggttgggaaaaatgatcctctgttgcttt
gatcaaaatttgagtaaagaaggtgttgtgcttgcggccgttatggcaaatttcagcagc
attttctgtagggttggttctgtaggcgaaaagctacaatctgatcgccgtaaggtgcaa
ttttgccatccaaatggtgacctctttactttactatctgtttacaaggaatgggagatt
gtgcctagggagaagaagaatagctggtgttgggataatagcatcaatgccaaatccatg
aggagatgccaggagactgtgctggaaatggaagcctgtcttctgaacgagctaaatatg
atcacagccagttactggagctggcatcctcaaggacctaaccagtatgacaaagtattg
caaagtattattctttcttcgcttgcggaaaatgttgctgtgtactcaggctacgatcag
cttggttatgaggttgcgttaacggggaagtgtgtccaactacatccttcctgttcgctt
ttgaattttaaccaacggccacgttgggtggtctttggggaagtccttgcagcagctaat
gagtatctggcctgtgttactgcatttgagtttagttgtcttgttagcctgaatcctgct
cctttgtttgattttctgaagatggatgcacaaaagctagaaaagaaggttttgacaggc
tttggagtcatgctactcaaaagattttgtggaaaatttaacagtagcattaataatctt
gtctcgcgcatcagaacttcttgtatggatgaaaggataggcattcaggtcaatgttgat
gagaatgaggttcttttatatgcttcttcaagagacatggagagtgtcacctgccaggta
aatgatgctctagagtacgaaaacaagctattacggaatgaatgctttgagaaatgtcta
ttcagcggaggatcagcagcttcggcctctgttgccctctttggagctggtggtgtgata
aagcatttggagcttgagaagagatgtttggctgtggacatatttcgttcgaagggaaat
gccattgatgataaggaactgctgatgtttttggagagagtcacatcaggtagtatttgt
atggtgcacaagtacactggaattggccaggacaacgaggagaacaagtggggcacagta
aaatttcttacccctgatgctgcagaacgggctataatcttaaatgaagtggagtttaat
ggtggctttctgaaaatggttccatcccgaagcacacacgggagtgatcaaaagatgttt
cggtcagttctcagagctaaagtttcttggcctcgtagatacagtagaggaatagggttt
ctgaaatgtgacccaagggaggtcgctttactggtggatgaattgtctgatcttccgatt
ggtgaaaaacttatccggtgtaatgcaagcgataagtacattgacaacatagtcattact
ggacttgataggaacgttagtgaggtagagatactcgaggtgttgagggcagcaacaaat
aggagaattctggatttctttctgttgagaggagattgtgtagaaaatcctcccgtagcc
acttgtgaagaagcactccggaaagaaatatctgccttcatgcctaaaagggttccgtat
gttgactcttttcgtgtccaggtcttccagccggaaccaaaggagtgtttcacaaaagca
tctataacatttgatggatctcttcatcttgaagcagccaaggccttggagcaaattgag
ggcatcgttttgcccggatgccttccctggcagaaaataagatgtcagcaactgtttcac
agctctgtttcctgccctgcaccagtttatcatgtcatacggaaccagctggattcttta
cttgctcgcctccgccaaaataaggatgtgaattgcaagctagagagaaatgctaatggt
tcctttatagttaggatatctggcacttccaccattgctgtggcagagttgagaaggcca
ttggagttgcttatgaaaggcaagattgtggaacacgtggacatcactccgacggttgtt
caacttctgttctctcgagaaggaatcaacattatgaggacaattcatggggagacagga
gcctatattcatcttgacaagcatagcttgcatgttaggatctttggttcttcagtcaat
gttgatagggccgagcagagatttattgattcccttctggtgctacatggaagaaaacaa
cttgaggtgcatcttcgtggaggacttttgcctcctgacctgatgaaaagagttgttaca
gcatttggaccagatcttagtctgcttaaagaaaaggtgcctggggcagagttttctctg
aacacaaagcgccattgcatctgtatcaatggcactaaagatatgaagcaaagtgttgag
gacataatctctgaaattgctcagagaagtttttcaactcaaacgacaggagatgaggct
cactgtcctatttgcttgtgtgaaccggaggatgcttatagacttgaagcttgtacccat
gcattctgtcgctcgtgcttgctagagcagtgcgagtctgtgatcaaaagccgggaaggt
ttccccatgtgctgtttgagttcgggttgcggggaaccctttctgtttgctgatttgaag
tctctactgtcaactgagaagttggaagaacttttcagggcttccttgggagcttttgtg
acagccaatgcgggtacttaccgcttttgcccctcaccagactgcccttcagtttatcgc
actgcagattctgatatggagtttggtgcaccttttgtctgtgatgcatgcaatgtggag
acatgtacgagatgccacctggagtatcatccatacctctcgtgtgaaacttaccagaag
gttaaagacaacccggatatctctgtagaagaatggtccaaggggaaagacgtacagaaa
tgtccggtttgcagttatgtaatagagaaggtagatggctgcaatcacatcgagtgtagg
tgcgggaaacatgtttgttgggtgtgtctgctgttctttgacagcagtgataattgctat
gagcatttgaggtctgttcacctgtccattacatga
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integrated database retrieval system
