Capsicum annuum (peppers): 107851462
Help
Entry
107851462 CDS
T04646
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann00040
Pentose and glucuronate interconversions
cann01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107851462
Enzymes [BR:
cann01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107851462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107851462
NCBI-ProteinID:
XP_047257452
LinkDB
All DBs
Position
12:11971770..11979129
Genome browser
AA seq
550 aa
AA seq
DB search
MASSVSEVVWITTLLKELGFPVDFPVIVHSDSETALQIAANPVFHERTKHIEIDCHFIRQ
KILGLVKTEHVDSKHQLASIVTKGLARAQHEFLVSKLGVLNVFTPPSLRGSVENRDCIDA
GLPHPHPYPEVVVQDVQRKVNESISRRKLLDTTINTQCQTGNLIDDCWRCDPNWSYNRQR
LADCALGFGQGAMGGKNGKYYVVNDPSDTDNVNPVPGTLRHAVIQDEPLWITFSGDMNIS
LKHELMFNSYKTVDGRGANVQITGNGCITLEHISNVIIHNIHISNCIPSGSTEIRTTPSN
VAPRGGSDGDGITISRSHNIWIDHCALSHCTDGLIDVIMGSTGITISNNYFTDHDKVMLL
GHNDGYLADVGMQVTIAFNHFGVGLVQRMPRCRRGYTHVVNNDFTEWQMYAIGGSANPTI
NSQGNRYTAPKDSNTKEVTRRMDADEGEWKGWNWRTDGDIMVNGAFFVASGDGKTNQYAK
ASSLEPQSSDNIDQLTLNAGVFNATRDNNTPRNGGINNPGTTLGRGTPAKLSITTTYSIF
FFSLLIILVL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcaagctctgtatcagaggtagtatggattacaacattattaaaggaattaggattt
ccagttgattttccagtgattgtacacagtgatagtgaaactgctttacaaatcgcagca
aatccagttttccatgaaagaacaaagcatatagaaattgattgtcactttattaggcaa
aaaattctaggacttgtgaagacagaacatgtggactccaaacatcaattagcaagcatc
gtgacaaaaggcttggcaagagctcaacatgaattcctagttagcaagctaggtgtgtta
aatgtgtttacaccacctagcttgagggggagtgttgagaatagagactgtatagatgca
ggccttcctcatccacatccttaccctgaagttgtggttcaagatgtacaaaggaaagtg
aacgaatcaatttccagaagaaaactcttggacaccacaataaacacccaatgtcaaaca
ggtaacctaatagacgactgctggcgctgcgacccaaactggtcctacaaccggcagcgc
ctggcagattgcgccctaggcttcggtcagggcgcaatgggaggtaaaaatggcaaatac
tacgttgttaacgatccctcggatacggacaacgtaaatccagttccaggaacactaaga
catgctgtaatccaagatgaaccactctggatcaccttctctggagacatgaacataagt
ttgaagcatgagctcatgtttaacagttataaaaccgtcgatggacgtggagcaaacgtg
cagattacaggcaatggttgtataacattggagcatataagcaatgtgattatacacaac
atccatatctccaattgtattccatcagggagtactgaaatacgaacaacaccatcgaac
gttgcacctcgaggaggatcagatggcgatgggataacgatatctagatcacataatata
tggattgatcattgtgctttatcacattgtactgatggcttaattgatgttattatgggg
tcaactgggattactatttcgaataactatttcactgatcatgataaagttatgctattg
ggacataatgatggatacttggctgacgttggaatgcaggtgacgatagcattcaatcat
tttggagtggggctagtacaaagaatgccaaggtgtagaagaggatatacacatgtagtg
aacaatgatttcacagaatggcaaatgtatgcaattggaggaagtgctaatcctactatt
aatagtcagggcaatcgttatactgcccccaaggattcaaatactaaagaggtaacaagg
cgcatggatgcggacgagggagagtggaagggatggaactggagaacagatggagatata
atggtaaatggtgcattttttgtggcatcaggtgatggaaagaccaaccaatatgccaag
gcgtcgagcttggagccacaatcctctgataatattgatcaactcactctcaatgctggt
gtttttaatgcaacaagggataataatactccccgaaacggcggcatcaacaaccccgga
acgacgttagggagaggcacaccagcaaaattatctataaccactacttattctatcttc
tttttctctcttttaattattttagttttgtaa
DBGET
integrated database retrieval system
