Capsicum annuum (peppers): 107853881
Help
Entry
107853881 CDS
T04646
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03013
Nucleocytoplasmic transport
cann03015
mRNA surveillance pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107853881
09122 Translation
03013 Nucleocytoplasmic transport
107853881
03015 mRNA surveillance pathway
107853881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107853881
03041 Spliceosome [BR:
cann03041
]
107853881
03009 Ribosome biogenesis [BR:
cann03009
]
107853881
03012 Translation factors [BR:
cann03012
]
107853881
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107853881
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107853881
mRNA cycle factors
Stress granule specific factors
107853881
Spliceosome [BR:
cann03041
]
Complex C
Other components
EJC/TREX
107853881
Ribosome biogenesis [BR:
cann03009
]
Eukaryotic type
90S particles
Helicases
107853881
Translation factors [BR:
cann03012
]
Eukaryotic type
Initiation factors
eIF-4
107853881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
107853881
NCBI-ProteinID:
XP_016554349
LinkDB
All DBs
Position
5:14386177..14392608
Genome browser
AA seq
409 aa
AA seq
DB search
MEAVATGSVIPANRRRPPMEEDRLVFETSKGVEPITSFAEMGIKDDLLRGIYQYGFEKPS
AIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQVVDTKNSEVQALILSPTRELAAQT
EKVILAIGDYINIQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAIK
LLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTNKMREHNF
TVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtggcgacaggttcagtaattccggcgaacaggcggcgaccgccgatggaa
gaagacagattagttttcgagacatcgaaaggcgttgaaccgattacgagcttcgctgaa
atgggtattaaagatgatctacttagaggaatttatcagtatgggtttgaaaagccgtcg
gcgattcaacaacgggctgttttgccgataatttcgggccgtgatgtgattgcgcaagcg
caatctggtactgggaagacttctatgattgctcttaccgtatgtcaagttgttgatacc
aagaattcagaggtacaagcgttgatattgtctcctacgcgggagcttgcagctcagacg
gaaaaggtgattttggctattggagattacattaacatacaggcacatgcatgtattgga
ggcaaaagcgtgggtgaagatatcagaaagctagagcacggagtacaagtagtctctgga
actcctggaagagtctgtgacatgattaaaaggagaactttacgaactagggccataaaa
ttattgattcttgatgaatctgatgagatgttgagccgtggttttaaggatcagatatat
gatgtttacagatatcttccaccagagcttcaggttgtactcatatctgccactctccca
aatgaaattctggagataacaagcaaatttatgacagatcctgtgcggattcttgtaaaa
cgtgatgaattgactctagagggcatcaaacagttctttgtagcggtggagagagaggag
tggaaatttgatacactttgtgatctttatgatacactcaccatcacccaggctgttatt
ttctgcaacacaaaacgaaaggttgattggctaacaaacaagatgcgcgagcataatttt
acagtctcatctatgcacggagatatgccacagaaggagagagatgctattatggctgag
ttccgaggtggcacgactcgtgttctaatcacaacagatgtttgggctagaggattggat
gttcaacaggtgtctctggtgattaattatgaccttcccaacaacagagagctctatatt
catcgcattggtcgctctggtcgttttggtcggaagggtgttgccataaattttgtgaag
agtgatgatattaaaattctgagagacatagagcaatactacagtacccagattgatgaa
atgcccatgaatgtggctgatttgatataa
DBGET
integrated database retrieval system
