Capsicum annuum (peppers): 107854085
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Entry
107854085 CDS
T04646
Name
(RefSeq) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107854085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107854085
03400 DNA repair and recombination proteins [BR:
cann03400
]
107854085
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107854085
Messenger RNA biogenesis [BR:
cann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
107854085
DNA repair and recombination proteins [BR:
cann03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
107854085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RQC
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-GeneID:
107854085
NCBI-ProteinID:
XP_047252388
LinkDB
All DBs
Position
9:202812567..202858528
Genome browser
AA seq
919 aa
AA seq
DB search
MMIEMKSTLKKYFGYTEFRPYQKEIIEKILDGKDCLVIMATGSGKSLCYQVPPLITGKTA
VVISPLISLMQDQVMALKQRGIKADYLSSAQTDRGVQSNAELGHYDILYMTPEKACALPN
SFWSRLLKAGMCLLAVDEAHCISEWGHDFRVEYKQLDKLRNVLFNVPFVGLTATATEKVR
SDIMNSLLMKNHHVAIGSFDRKNLFYGVKSFSRSSLFVDQLVEEISKYVDNANSTIVYCT
TVRDTEEIFKSLLEAGIKAGIYHGQMANKAREEAHRSFIRDEFYVMVATVAFGMGIDKPN
IRYVIHYGCPKSLESYYQESGRCGRDGVPSACWLYYTRSDFAKADFYSAEARSASQRKAI
IEAFSAAQHYCMLSTCRRKYLLDYFADEYAHDDCGNCDICTSSMKEKDLSREAFLLMSCI
QSCGGRWGLNLPIGILRGSRSKKIVDAQFDKLPFHGLGKELSANWWKGLAYQLISHDYLA
ETFKDMYKTVSISEMGLQFLRSSSPDHQPPLFLTETPEMDLDEKNKDTPSETSEIDGLTS
KEFEGFSQAETQLYKMLIEERIKLARATGTAPYAVCGDQTLKRISLTRPSTKARLANIDG
VNQHFIKLYGDNFLRSVKQISEACNLSLDGNPTSQTSVPSKTLTVRSNKKLTPAKFEAWK
MWHEDGLTFKEIANFPGRAAAIKEQTVLEYILEAAREGCKMNWTRFCEETGLTRETFLSI
QNAISKVGTEKLKPIKTELPEEISYGQIKAYLTMQEAGVSAELFSSTSEQSCNGDECLTE
ISEIVQNSIIPSDVQRDDGIVEAPLITGINGASSPGKTEGAESHLLTERSRKEAASSEGD
LLIPTKRQRVEAAEGEIFRTLDATEESILSWLKNFDDGVTLSDLLEHFNGSNEKSLVNLL
CCLEGEFLIYRKSNLYKLM
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagaaatgaagtctactctcaagaaatattttgggtacactgagtttcgacct
tatcagaaggaaatcatagagaagattttagatggaaaagactgtctggtaataatggcc
acaggcagtggcaaatcattgtgctatcaggttcccccactgataaccggaaagactgct
gtggttataagtcctctcatctctttgatgcaagatcaggtgatggcattgaaacagagg
ggaattaaagctgactatctttcaagtgctcagactgatcgtggggtgcagtcgaatgct
gagttgggtcactatgatattctgtatatgactccagaaaaggcttgtgcgcttcctaac
agtttctggtcaagattgttgaaagcagggatgtgtctcttggctgttgatgaagcacac
tgcatctcagaatggggtcatgatttcagggttgagtataaacagttggacaagctgcgt
aatgttcttttcaatgttccatttgttggcttgacagcaactgctacagaaaaggttcgg
agtgacattatgaactccttgctgatgaaaaaccatcatgttgctattggctcatttgat
cgcaaaaatcttttctacggagtcaaatcttttagtcgtagttctctatttgttgatcag
ctggtggaggagatctccaaatatgtagataatgcaaattcaacaatagtatattgtaca
actgttagagacactgaagagatcttcaaatcacttcttgaggcaggaatcaaagctgga
atctaccatggtcaaatggctaataaagcacgtgaggaggcgcacaggtcgtttatcaga
gatgaattctatgtgatggttgcaactgttgcttttggcatgggtatagataaacctaac
ataaggtatgtgatacactatggctgcccaaagagtctagagtcttactaccaggaaagt
ggacgatgcggcagagatggtgttccttcagcttgctggctttactacacgagaagtgac
tttgcaaaagctgatttctactctgcagaagctcgttcagcatctcaaagaaaagctatt
atagaagcattttctgctgcacaacattactgcatgctatcaacttgtagaagaaaatat
ttgttggattactttgcagatgagtatgcccatgatgattgtggaaactgtgatatttgc
actagctcaatgaaggaaaaggacttgtccagagaagcatttcttctaatgtcctgtatt
cagtcatgtggaggccgttggggcttgaatctacccataggcattcttcgtggatctcga
tccaagaaaattgttgatgctcagtttgacaagcttccatttcatggtcttgggaaagag
ttatctgcaaattggtggaagggactggcttaccaattgatttcacatgattatttggca
gaaaccttcaaagatatgtacaaaactgtgagcatcagtgaaatgggattgcagtttctt
agatccagtagccctgatcatcaacctccactgtttttgacggaaactcctgaaatggat
cttgatgagaaaaacaaagatacacccagtgaaacgagtgagatcgatggtttgacttct
aaggaatttgaaggattttcacaagctgaaactcaactgtacaaaatgcttatagaagag
agaattaagcttgccagagctactggaactgctccatatgcagtctgtggtgaccaaaca
ttgaaaaggataagcttgaccaggccttctacaaaagcaagactagcaaatatagatggt
gtaaaccagcatttcattaaactgtatggtgataattttcttcgaagtgttaaacaaata
tcagaagcttgcaatctctctttggatgggaatccaaccagtcaaacctctgttcccagt
aagacactcacagttcgaagcaataaaaagttgacaccagcaaaatttgaagcatggaag
atgtggcatgaggatggtcttacgttcaaagaaatcgctaattttcctggtagagcagca
gcaataaaggaacaaactgtgctagagtatatactcgaagctgcacgagagggatgcaaa
atgaattggaccaggttttgtgaggagactgggttgacaagagagacattcttgagcatc
cagaatgccatctcaaaagttggtacagaaaaattgaagcccataaaaactgagttacca
gaagagataagttatggtcagataaaggcatacttgacgatgcaagaggcaggagtatca
gctgaattgttttcatccacatccgagcaaagttgcaatggagatgaatgtttgactgaa
atatcagaaatagtacagaactctattattccatctgatgtgcaaagagatgatggcata
gttgaagcacctctcatcactggtataaatggtgcttcttctccagggaaaactgaagga
gcagaatctcatctcctgactgagaggagtaggaaagaagctgcatccagtgaaggtgat
ttgctcattcctacaaaacgccagagggtcgaagcagcagaaggagaaatttttaggact
ctggatgccacagaagaatccatattgagctggctcaagaactttgatgatggggttacc
ctttctgatcttttggagcacttcaatgggtccaacgagaaatctttagtcaatctgctt
tgttgtcttgaaggtgagtttttgatatataggaagagcaacctatacaagcttatgtaa
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