Capsicum annuum (peppers): 107854838
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Entry
107854838 CDS
T04646
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107854838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107854838
03012 Translation factors [BR:
cann03012
]
107854838
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107854838
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107854838
Translation factors [BR:
cann03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107854838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
Helicase_C
DEAD
HA2_C
HA2_N
AAA_19
ATPase
nSTAND3
Ank_2
Rad17
AAA_22
AAA_23
Ank_5
NACHT
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
107854838
NCBI-ProteinID:
XP_047249657
LinkDB
All DBs
Position
7:complement(124439812..124453775)
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AA seq
1206 aa
AA seq
DB search
MASTCPSTSSSSSGLGKRRQKKGQRQQEVTNVTESTRIRVALVLEQFRASNDEVYTFEPN
LSNRDRAAVHILCRKMGMKSKSSGRGDQRRISVFKNKQNVDTLKGKDARSCFKFSEEAKY
VLQDLFTRYPPDDGETCEQVVGKHSKKVDKLQGKKDDMFCKPAMNKSEIAKRVQSLASRI
EKTPSLKQIAVQRSKLPIASFKDVIISTVVSNQVVLISGETGCGKTTQVPQFILDHMWGK
GETCKIVCTQPRRISATSVSERISAERGESVGDTVGYKIRLESRGGRQSSIMFCTNGVLL
RALVTNGSAIFNKLAPRKLGKDDISDITHIIVDEIHERDRYSDFMLAILRDLLPSYPNLC
LVLMSATLDAERFSKYFAGCPVIRVPGFTYPVKTFYLEDVLSIVKSTENNHLDSTSTSGM
SEESILTEEYKVALDEAIDVAFSDDDLDPLLDLISSDGGPKVFNYQHSSSGVTPLMVFSG
KGCIGDICMLLSFGADCQLRANDGKTSLDWAEQENQTEAAEIIKRHMEKSSSSCEEQQHL
LDKYLSTVDPELIDDVLIEQLLRKICIDSEDGAILVFLPGWEDINRTRDRLKASQYFNDP
SKFSIIPLHSMVPSVEQKKVFRRPPSGCRKIVLSTNIAETAITIDDVVYVIDSGRMKEKS
YDPYNNVSTLQSSWVSKASGKQREGRAGRCQAGICYHLYSKLRAASLPDFQVPEIKRIPI
EELCLQVKLLNPDCKIEEFLQKTLDPPVYETIRNAIIVLQDIGALSFDEKLTELGERLGS
LPVHPLTSKMLLISILLNCLDPALTLACASDYRDPFTLPMLPNEKKRAAAAKVELASWYG
GRSDQLAVVAAFEGWKGAKENGQESRFCSMYFVSPSTMNMLSGMRKQLQSELLRNGFIPG
DGSSCNLNAQDPGILHAVLVAGLYPMVGRLLPPLKGGKRAVVETAGGDKVRLHPHSTNFK
LSFKKFYDRPLIVYDEITRGDGGLHIRNCSIIGPLPLLLLATEIVVAPRNEDDDDDDDDE
SDSEDADEDDGEEDNIKADPSDAQKGEKIMSSPDNTVTVIVDRWIPFESAALDVAQIYCL
RERLDAAILFKVTHPGKVLPEVLAASIYAVACILLYNGMSGISLPLEPVDSLTTMVSATG
IGHSDTGRNNGMNPNNSPNSFGYSGLHQRPYLHHQRGGTHISKGSFAYGGTTQRGHSKRQ
RGNGPY
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaacatgtccatcaacatcatcatcatcatctgggttagggaagaggaggcaa
aagaaaggacaaagacaacaagaagttaccaatgttactgaatcaactcgaattcgggtt
gccctagttcttgaacagtttcgtgcttctaatgatgaagtgtatacatttgaaccaaac
ctttcaaatcgtgatagagctgcagttcatatattatgccggaaaatgggaatgaaatca
aaaagttctgggcgtggggatcaacgtcgtatatctgttttcaagaataaacagaacgtt
gacacactgaaaggaaaggatgcgcgaagttgttttaaattttcggaagaggcaaaatat
gttctacaggatttatttacgcggtatccacctgatgatggggagacatgtgaacaagta
gttgggaaacacagtaagaaagttgataaattgcaaggaaagaaggatgatatgttctgt
aaacctgcaatgaacaagtctgaaattgcaaaaagggtgcagtcacttgcatcaagaata
gaaaagaccccaagcctgaaacagattgcagtacaaaggtccaagcttccaattgcttcc
ttcaaggatgttattatatcaactgtagtatctaatcaggtggttttgatctctggtgaa
actggctgcgggaaaactacacaggtcccccagtttattttagatcatatgtggggaaaa
ggtgagacatgtaaaattgtatgtactcagccacgacgaatttctgccacatcagtttct
gaaagaatttctgctgaaagaggcgaaagtgttggcgatactgttggttacaagatacgg
ctggaaagcagaggtgggaggcagtcatcaattatgttttgtaccaatggggttctattg
agggccctggttaccaacggaagtgccatctttaacaagctcgctcccaggaaattgggc
aaggatgacatttctgatataacccacatcattgtggacgaaatacatgagagggatcgc
tactccgatttcatgctcgcgattctcagggacttgcttccttcatatccaaatttgtgt
ttggttctgatgagtgctacactggatgctgaacgtttttcaaaatactttgctggctgc
ccagttatccgagtccctggatttacatatcctgtaaaaacattctatcttgaggatgta
ctttctattgtaaagtctactgaaaataatcaccttgactccacctcaaccagtggcatg
tctgaggaatcgatattaactgaggagtacaaagttgccttagatgaagcaattgatgtg
gctttttcagatgatgatctggatcccctgttagatttaatatcttctgatgggggacca
aaagtcttcaattatcagcattcttcaagtggagtgacaccattgatggtgttttctgga
aagggctgcattggtgacatttgcatgctcctctcttttggtgctgactgccaattacgt
gctaatgatgggaaaacttctctcgattgggctgagcaggagaatcagacagaagctgct
gaaataatcaagagacacatggagaaatcatcttccagctgtgaggagcagcaacattta
cttgacaaatacctatcaacagttgaccctgaactgattgatgatgtccttattgagcaa
ctattaagaaaaatatgcatagactcggaggacggggccatacttgttttccttcctggt
tgggaggacattaacagaacacgagatagattgaaagcaagccaatatttcaatgatccg
tctaagttttcaataatccctctccattctatggttccatctgtggagcaaaagaaggtt
tttaggcgccctccttcaggctgccgcaaaattgttctttcaactaatattgctgaaact
gccataaccattgatgatgttgtttatgtaatagacagtggacgaatgaaagaaaaaagt
tatgacccttataataatgtatcaactcttcagtcttcatgggtctcaaaagcaagtggt
aagcaaagagaagggcgtgccgggcggtgccaggcagggatttgttatcatctttattca
aaactcagagctgcttcattgcctgatttccaggtccctgagattaagaggattcctata
gaggaactatgtctgcaggtcaagcttcttaaccctgattgcaagatagaagaattcctg
cagaagacacttgatcctccggtttacgagaccatacgtaatgccatcattgttcttcaa
gatatcggggcgttatcatttgatgagaaacttacagagcttggagaaagactaggatct
ctaccagttcatccacttacaagcaagatgcttttaatttccatcttattgaactgcctt
gacccagcattgactctggcttgcgcttctgactatagagatccatttaccctacccatg
ttgccaaatgagaagaagagagctgcagctgcaaaagttgagttagcttcatggtatggt
ggaagaagtgatcaattagcagttgtggctgcgtttgagggctggaaaggtgcgaaagaa
aacggtcaagaatcaaggttttgttctatgtacttcgtatctccaagcactatgaatatg
ctatcaggtatgcgtaagcaactgcaatctgaactattgaggaatgggtttattccagga
gatggatcttcctgtaaccttaatgcacaggatccaggcatactacatgctgttcttgtt
gctggtttgtaccctatggttggaagactgctcccacctctaaaaggtggtaagagggct
gtcgtagagactgcaggtggtgataaagttcgattacaccctcattctactaacttcaag
ctttcattcaaaaaattctatgatcgaccattaattgtatatgatgagatcactcgtggt
gatggaggtctgcatataaggaactgtagtatcattgggccactcccactgttgttgctg
gcaacagagattgtagtggctcctcgaaatgaagatgatgatgatgacgatgatgatgaa
agtgattctgaagatgctgatgaggatgatggcgaggaagataatattaaagcagatccg
tcagatgcccaaaaaggagaaaaaattatgtcttctcctgataatacagttaccgtcatt
gttgaccggtggattccttttgagtcagcagctcttgatgttgctcaaatttactgcctg
agagagagattagatgcagcaattttattcaaggtgacacatcctggaaaagttcttcct
gaggttcttgcagcctctatatatgcagtggcttgcatcttgttgtacaacggaatgtca
ggaatctcattgccgctggagcctgtggactcgcttactacaatggttagtgctactggg
attggtcactctgatactggcagaaataatggaatgaatcccaacaattctcccaattca
tttgggtacagcggcctgcatcagcggccttatttgcatcatcaaagaggtggcactcat
atatcaaagggatcatttgcatatggaggaaccacgcaaagaggtcattctaagcggcag
cgtggaaatggaccttattaa
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