Capsicum annuum (peppers): 107855430
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Entry
107855430 CDS
T04646
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107855430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
107855430
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107855430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
107855430
NCBI-ProteinID:
XP_016555933
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Position
6:complement(208679956..208689370)
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AA seq
939 aa
AA seq
DB search
MDEKLEEQSKLPELKLDARQAQGFLTFFKTLPKDLRAVRLFDRRDYYTAHGDDATFIAKT
YYHTTAALRQLGNGVDALSSVSVSRNMFETISRDILLERMDRTLELYEGSGSNWRLVKSG
TPGNFGSFEDILFANNEMQDSPAIVALAPNFDQNGCTVGLGYVDITKRVLGLAEFLDDSH
FTNLESALVALGCRECLVPTETGKSSEYRPLYDAISRCGVMVTERKKTEFKGRDLVQDLG
RLVKGSVEPVRDLVSGFECAAGALGCILSYAELLADDSNYGNYTVKQYNLNSYMRLDSAA
MRALNVMESKSDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVDEINCRLDLVQAF
VEDAALRQDLRQHLKRISDIERLTRNLERKRAGLLHVVKLYQSSIRIPYIKSVLERYDGQ
FATLIRERYIESLEKWSDDHHLNKFTALVETAVDLDQLENGEYMISSAYDPSLSALKDEQ
ETLEQQIHYLHKQTANDLDLPMDKSLKLDKGTQFGHVFRITKKEEPKVRRQLNSHYIVLE
TRKDGVKFTNTKLKKLGDRYQKIVDEYKSCQKELVARVVQTVASFSEVFEGIAGSLSELD
VLLSFADLASSCPTAYTRPNISPPDVGDIVLEGCRHPCVEAQDWVNFIPNDCRLVRGESW
FQIITGPNMGGKSTYIRQVGVNVLMAQVGSFIPCDNATISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATNRSLIIIDELGRGTSTYDGFGLAWAICEHIVEEIKAPTLFATH
FHELTALANENGNNGHKQIAGVANFHVSAHIDSSSRKLTMLYKVQPGACDQSFGIHVAEF
ANFPQSVVALARAKASELEDFSPNTIMPNDCKEAASKRKREFDPHDVSRGTARARQFLQD
FTQFPLDKMDLDEALQQLRKMRTNLERDAVDSQWLQQFF
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaaattagaggaacagagcaagctacctgagcttaaacttgatgcaaggcaa
gctcaagggtttctcacattcttcaaaaccctacccaaggaccttagggcagttcgtctc
tttgatcgtcgggactattatactgctcatggagatgatgcaactttcattgcaaagaca
tattaccatacaacagctgctttacgacagttgggtaatggagttgatgctctttccagt
gttagtgtgagtagaaacatgtttgaaacaatatctcgtgacattctcttagagagaatg
gatcgtactctagaattgtatgagggcagtggttcaaactggagactggtcaaaagtggc
accccaggaaattttggaagttttgaggatattctgtttgctaataatgaaatgcaagat
tctccggctattgttgcgcttgcgccaaactttgatcagaatggatgtacagttgggtta
ggctatgttgatattactaagagagtccttggattggcagaatttctagatgatagccac
ttcaccaatttggaatctgctttggttgctcttggttgcagggaatgtcttgtaccaaca
gagactgggaaatccagtgagtacaggcctctgtatgatgcaatatcgagatgtggcgtg
atggtaactgaaagaaagaaaactgaatttaaagggagggatttggtacaggatctcggt
aggcttgtcaagggttcagtagaacctgttagagatttagtctctggttttgaatgtgcg
gcaggcgctttggggtgcatactttcctatgcagaactacttgcggatgatagcaattat
ggaaactacacagtcaaacaatacaacctcaatagttacatgagattagattctgctgct
atgagagcactgaatgttatggaaagcaaatcagatgctaataaaaactttagcttgttc
ggtctcatgaatagaacgtgcactgctggaatgggtaaaaggttattgcacatgtggctg
aaacagccgttactggatgtagatgagattaactgtagactggatttagttcaagcattt
gtggaggatgccgcacttcgccaagatttgaggcagcatctgaaaagaatttcagatatt
gagcggctgacacgcaatcttgagaggaaaagagccggcctactgcacgttgtaaaactc
tatcagtcaagcatcagaataccatatatcaaaagtgttttggaaagatatgatgggcaa
tttgcaacacttatcagggaaaggtatattgagtctcttgagaaatggagtgatgatcat
cacctgaataagttcactgctcttgtggaaactgctgtcgaccttgatcaacttgaaaat
ggagaatacatgatttcttctgcatatgacccaagcttatctgctctgaaggatgagcag
gagacactggaacaacagattcattatttgcacaaacaaactgccaatgatcttgatcta
cctatggataagtctcttaaactagataaaggaacacaatttggacatgtcttcagaatt
accaagaaagaagaaccaaaagtcaggaggcagctaaactctcactacattgttcttgaa
acacgtaaggatggggtaaagttcaccaatacaaaactcaaaaaattaggggatcggtac
cagaagattgtagacgagtataagagctgtcagaaagaactggtagctcgggtagttcaa
acagttgcgagtttctccgaggtgtttgaaggtatagctggttcactttctgagttggat
gtgctactaagttttgcggatttggcttccagttgcccaactgcctacacaagaccaaat
atcagtccgccagatgtgggagatattgtacttgaagggtgtagacatccttgcgtggaa
gctcaagactgggttaacttcatccctaatgactgtagactagttaggggtgaaagttgg
tttcagattatcacaggccctaacatgggtggaaagtcgacctacattcgtcaggttggt
gtgaatgtcctgatggcccaagttggctcatttattccatgtgacaatgccaccatttct
attcgagattgcatttttgctcgtgttggcgctggagattgccagctgaggggggtttct
acttttatgcaagagatgcttgagactgcatcgatcttgaaaggagctactaatagatca
ttgattataattgatgagttgggccgtgggacatcgacttatgatggctttggtttagct
tgggctatttgtgagcacattgttgaagaaattaaagcaccaacattgtttgccactcac
tttcatgagctgactgcattggccaatgagaatggaaacaatgggcataagcaaattgct
ggtgtggcaaattttcatgtcagtgcacacattgactcttctagtcgcaagctaactatg
ctttacaaggttcaaccaggtgcttgtgatcaaagttttggcattcacgttgcggagttt
gccaattttccacaaagtgttgtggccctggccagagctaaggcatctgagttggaggat
ttctctcctaatacaataatgccaaatgactgtaaagaggcagcttcaaagcggaagagg
gaatttgacccacatgacgtgtctagaggtactgcccgagctcgtcagttcttacaggat
ttcacccagtttccactggataagatggatctagacgaggccttgcaacagttgcgcaaa
atgaggaccaacctggagagggatgcagttgacagtcagtggcttcagcaattcttttag
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