Capsicum annuum (peppers): 107855694
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Entry
107855694 CDS
T04646
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03430
Mismatch repair
cann03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107855694
03460 Fanconi anemia pathway
107855694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
107855694
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
107855694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
MetRS-N
Motif
Other DBs
NCBI-GeneID:
107855694
NCBI-ProteinID:
XP_016556191
UniProt:
A0A1U8FBY8
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Position
3:complement(30762846..30773059)
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AA seq
940 aa
AA seq
DB search
MDGAAATGGSPSTIKPINKGVVHRICAGQVILDLPSAVKELVENSLDAGATSIEVSLKDY
GAESFQVIDNGCGIPPHNFKVLALKHHTSKLSDFPDLQSLATFGFRGEALSSLCALGDLT
VETRTKNEQIATHLTFDNSGLLIAERNTARQVGTTVTVKKLFSTLPVRSKEFHRNIRKEY
GKLITLLNAYALISKGIRLVCTNSALKNAKSVVLKTQGSGSLKDNIITIFGMSTFTCLEP
LKVCLSDSCTVEGFISKPGNGSGRNLGDRQYFFVNGRPVDMPKVGKLVNELYRGANSRQY
PIAIMNFVIPPRAFDVNVTPDKRKIFLSDEGSILRFLREALEKIYSSNYASYAVNSLQEV
EEKHTSTHSHLEAFQFQPKQLLSDTADTQEGDCGGELRKDGHFLNKAQELKDTSVMEVML
NDRNRSTEKDFSLRFHGKKKDNNSSRSPWQEVGGLTTAISDRHALNPGSKKKRCIDSACD
VDRASIVQSSLTKFVTVNKRKHENMSTMLSEVSLLRNGLSVYPSGEDNSLKDTTSGRSPD
NPVKDDKCDGVTINESGSSKFSKTDKFLHQMKHSRISTVLDQTNNLSPPGNSIQNGKFEE
EHEVQMNELCVAEPLPLDSTCNNIHGVSENMVDAASSEQPVSLTLDAPKASSDLKIVSTL
QFSVKELISRRKQRLSRLQLLNPISQRMKTKRDYAAATLELSESENEEAKARALAAATNE
LEKLFKKEDFTRMKVIGQFNLGFIIARLDQDLFIVDQHAADEKYNFERLSQSTILNQQPL
FRPLTMELSPEEEIVISIHNDTFRRNGFLLEEDMCAPPGCRFKLKAVPFSKNITFGIADV
KELISILADSEEECSVMGTYRNDRADSLCPPRVRAMLASRACKSSVVVGDPLDRNEMQKI
LDNLSRLKSPWNCPHGRPTMRHLVDLRTVHKRHEADETTL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggacggagcagcagcaacaggaggttcaccgtcgactataaagccgataaacaaaggt
gtagtacacagaatctgtgctggtcaagttattctagaccttccttccgccgtcaaggaa
ttggttgagaatagcttggatgccggcgccactagcatcgaagtctctctcaaagactac
ggtgctgaatccttccaggttatcgataacggttgtggcatccctcctcataatttcaag
gtactggcgctaaaacatcatacctcaaaactatcagattttcctgatcttcagtcatta
gcgacttttggatttagaggggaggcattgagttcactttgtgctttaggggatttgacg
gttgaaacaagaacgaagaatgagcaaattgcgacacacttgacttttgataattcgggc
cttctgatagccgaaaggaacacagctcgccaagttggtaccactgtcactgttaagaag
ttattctccactttaccagtgcgaagtaaagagttccaccgcaacatccggaaggaatat
ggaaaacttattacattgctgaatgcctatgctcttatttctaagggaatcagactagtt
tgcaccaactcagctctaaaaaatgcaaaatctgtagttctgaaaactcagggaagtgga
tctctgaaagacaacattattacaatatttggtatgagtacctttacttgtctggagcct
ctcaaagtatgtttgtctgatagttgcactgttgaaggattcatttccaagcctggcaat
ggtagtggacgcaacttaggagatcgacaatacttttttgtgaacggacggccagtagat
atgccaaaagttggcaagcttgtaaatgagttgtatagaggtgcaaactctcggcaatat
cccattgcaatcatgaactttgtgatcccaccaagagcatttgatgtcaatgtaactcct
gataaaagaaaaatatttttgagtgacgaaggttccatattgcgctttttgagagaagct
ttagaaaagatatactcatctaattatgctagttatgctgttaatagtctccaagaggtt
gaagaaaaacatacatccactcattcccatcttgaggcctttcagtttcaacccaagcaa
ttattatcagatactgctgacactcaggaaggtgactgtggtggagaactacgtaaagat
ggtcattttctcaacaaagctcaggaattaaaagatacgtctgtcatggaggtgatgcta
aatgacagaaacaggtcaactgagaaagacttcagtcttcgattccatggaaagaagaaa
gacaataacagttccagaagtccctggcaggaagtcggaggtctgactactgctatatcc
gacagacatgcactcaacccaggctcaaaaaagaaaagatgtatcgatagtgcatgtgat
gttgatcgtgcaagcattgtgcagtcatcactcaccaaatttgttacagtaaataagaga
aagcatgagaatatgagtactatgttatctgaggtatctctcctgagaaatggattgtct
gtgtatccatcaggagaagacaattctttgaaggataccacatctggaagatccccagat
aatccagtaaaggatgataagtgtgatggagtgaccattaatgagtctggatcttccaag
ttctcaaagacagataaatttcttcatcaaatgaagcactcaagaatcagtacagtcctt
gatcaaacaaataatttatctccacctggaaatagtatacaaaatggaaaatttgaggag
gagcatgaggttcaaatgaatgaattatgtgtagctgaaccactgcctcttgattctaca
tgcaacaacatccatggtgtgtcagaaaatatggtagatgctgcttcttctgaacagcct
gttagtctgactctggatgctcctaaggcttcatctgatttaaagatcgtttcgacattg
caatttagtgtgaaagaacttatatcaagaagaaagcaaagactatcaagattacaactc
cttaatcctatatctcaaagaatgaaaacaaagagggattatgctgcagcaaccctggag
ctctctgaatcagaaaatgaagaggctaaggcaagggcattggctgctgctaccaatgag
ttggaaaaacttttcaagaaagaagattttactagaatgaaggtgattgggcaattcaat
cttggattcattatagccagacttgatcaagatctttttattgttgatcagcatgccgct
gacgagaagtataattttgagcgtctgtcacaatcaactatcttgaatcagcaaccttta
tttcggcccttgacaatggagttatctcctgaagaagaaatagttatttccatccacaat
gatactttcaggagaaatggatttctattggaagaggatatgtgtgctcctccagggtgt
cgttttaagctaaaagcagttcccttcagcaaaaatataacgtttggaattgcagatgtg
aaagaactcatttccattctcgccgatagcgaggaagaatgttctgtaatgggtacttat
aggaatgatagagccgattcattatgtcctcctagagttcgtgcaatgttggcatcgcgt
gcctgcaaatcgtctgtcgttgttggagatccacttgacagaaatgagatgcaaaagata
cttgataatctgtcacgcctcaagtctccgtggaattgtccacatggaagaccaacaatg
cgtcacttggttgatctgaggactgtacataaaagacatgaagcggatgagaccacctta
taa
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