Capsicum annuum (peppers): 107858822
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Entry
107858822 CDS
T04646
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107858822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cann03032
]
107858822
03400 DNA repair and recombination proteins [BR:
cann03400
]
107858822
DNA replication proteins [BR:
cann03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
107858822
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107858822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
107858822
NCBI-ProteinID:
XP_047253903
LinkDB
All DBs
Position
1:complement(152210968..152233981)
Genome browser
AA seq
993 aa
AA seq
DB search
MMTTKVFTGANVFMSRNLVPPEQFDALHHALKLNGAQVFLCCDPSRNALNDYHVISSPQH
EKFGDLQAKGCNLIGPQCVLSCAKEQRQLPQQEFTCCLAMDGVKILASGFEKDEKVEIGK
LVIAMGGILHTKASLDVSFVIVKNVLAAKYKWAVNILKKPVVTINWLHQCWKEHRLVPQE
SFKVLPFSGLTICVSRIPADERKEMERIILQNGGKYSPELTKKCSHLICDAPEGDKYKVA
TRWGHIHTVTKRWFDQSVARRACLNEESYLVQAASNTPNTVRMTHQRSLEKGMKNLQGLC
SSAVTSNGQSVFCCRAANSDLEATPSQNMSATSPYVPDTKEEEKSPAENPKSDYSAPVST
KDEDSGALTELEKNGCEGGVADDSQTDDNDLYLADCRILIVGFNASEMRKLVNLVRKGGG
SRYMSFGEKLTHIIAGNPSENEIKELRNLAALGVIHVVKSGWLEDCDRENKEVPVLRKHI
AYDLLLPKDPIHCSNRATISTSMKRQGKSQVHTMSSDEHAWRSTDSGCAMPSNKSRELEN
MNDIRTSLRESRVQHQPYTSNGKDELKILNESSCAVNGRKPSSTVFKGRRFCFSASFPAD
RRAEIIEWVKQGGGVVVEDQDKTVVHFTVECHGILRSEKDGAAATFVSSHWIKSCLEDGC
LLDVGSHILYSPLPCRVPFPAFQSFCVCVSQYDEKERQLLRNLCFTIGAKFVEKLTKKVT
HLLCKFTSGPKYEAACKWGIQPATCEWIYECIRQNKVVSADPFYPKEVTSEDREAGACTV
SQFPTQAFRMISGDTASQPQTLAQELINVRTEAFAGRSTAKIEMKYSSKLNKKARLLVVE
EPNCSLSCSPKENNAFCGANPPEKNLTGSTNVDSSIVPDVAAVIEDLLEQTSKIHDQKSP
SRSECDEELFTSGCNNLAQGHGDGHATLGLSNHWTNRFEKEDETQSHSGDATANVYDHFS
ETQTDSQVVGYAEDLSGRQMIIDRVRTRSSGMS
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgatgacaacgaaggtattcaccggagcaaatgtattcatgtcgagaaacctcgttccg
ccggagcaattcgacgcgcttcaccatgctctcaagctcaacggagctcaagttttcctc
tgttgcgacccctcccggaatgctctcaacgattatcacgtcatttcttctccccaacat
gagaaatttggggatcttcaagctaagggctgcaatttgataggtcctcaatgtgtgctt
tcctgtgccaaagaacaaaggcaactaccccagcaggagtttacttgttgccttgcaatg
gatggggtcaagatcctggcatctggttttgagaaggatgaaaaggttgaaattggaaag
ctggtaattgcaatgggaggaatcctgcatacaaaagcatcattggatgtgagctttgtt
attgtgaagaacgttttggctgcaaagtacaagtgggctgtaaacattctaaagaaacca
gttgtcactattaattggcttcatcaatgctggaaagaacaccgtcttgttcctcaggag
tcattcaaagtccttcctttttctgggttgacaatttgtgtctccagaattcctgcagat
gagcgaaaggagatggaacggattatcttgcaaaatggcggaaaatactcccctgagctg
accaaaaagtgctcacatttaatttgtgatgctccagaaggtgacaaatacaaggttgcc
acaagatggggtcacatacatacagttactaagaggtggtttgaccaatctgttgcaaga
agagcatgtcttaatgaggagtcatatcttgttcaggctgcttcaaatactccgaatacc
gtaagaatgacacatcaacgtagcctggaaaagggcatgaaaaatctacaagggttgtgc
tcctcggccgtgacatcaaatgggcaatctgttttttgctgtcgagcggccaattcagat
ctggaagctaccccctcgcaaaatatgtctgcaacatctccatatgttccagatacaaaa
gaggaggagaaatcacctgctgagaacccaaagagtgattacagtgctcctgtctctaca
aaggacgaggacagtggagcacttacagagctggaaaagaatggttgtgaaggtggtgtt
gctgacgactctcaaacagatgacaatgatctttatttggcagattgcagaatcctaatt
gttggttttaatgcatctgaaatgcgaaaacttgtcaacctagtccgaaaaggcggtggt
tctcgttacatgtcttttggtgaaaagttgacacacataatagctggaaatccatcagag
aatgaaatcaaagaattaagaaaccttgcggctttgggtgtcattcatgtggtaaaatca
ggatggctggaggattgtgatcgtgagaataaagaagttcctgttctaaggaagcacatt
gcttatgatttacttcttccgaaagatcctattcactgtagtaacagagctacaatcagc
acgagtatgaaaagacaaggaaaatctcaggtgcatactatgtcttcggatgaacatgca
tggagaagcacggattctggatgtgcaatgccatcaaacaaaagcagagaactagaaaat
atgaatgacattagaacttctttgagagagagtagggttcaacatcagccttatacttct
aatggaaaagatgagttaaagatactgaatgaatccagttgtgctgttaatggtagaaaa
ccatcatctactgtgttcaagggaaggcgattttgcttttcagcttcatttcctgctgat
cggagagctgaaattattgaatgggttaagcaagggggaggagtggtggtggaagatcag
gataaaacagttgtgcatttcactgttgagtgtcatggtatattgcgctctgagaaagat
ggtgctgcggctacttttgtatcaagtcactggattaagtcttgtctggaggatggatgc
ttgctggatgttggtagtcacattctctattctccacttccatgccgagttcctttccct
gcatttcagagtttctgcgtatgtgtttcgcagtatgatgagaaagaaagacagttgttg
agaaatttgtgttttacaattggagccaaatttgttgagaaattaacgaaaaaggtcaca
catttgttgtgtaaatttactagtggcccaaaatatgaggctgcatgtaagtggggaata
caaccagccacatgtgagtggatttatgagtgtatcaggcagaacaaagttgtttctgca
gatccattttatcctaaagaagtcacttctgaagatcgagaagctggggcatgcacagtg
agccagttccccacacaagcttttaggatgatatctggtgataccgcttcccagcctcaa
accctggcccaggagctcataaatgtgagaactgaagcttttgctggtagaagtacagca
aagatagaaatgaagtattcaagtaaattgaataagaaggctaggctcttggtggttgaa
gaacccaattgttcattgtcctgctcaccaaaagaaaataatgcattttgcggggcaaat
cccccagaaaagaacctgacgggaagtactaatgtagattcttccatagttcctgatgta
gctgctgttatagaggatttattggagcaaacaagcaagatccatgatcaaaagtctcca
tcaagaagcgagtgtgatgaagaactctttacatctggttgtaacaatcttgctcaaggt
catggagatggtcatgctactcttggattgtctaaccactggacgaacaggtttgagaaa
gaggatgaaacccagagtcattcaggagatgcaactgcaaatgtgtacgatcacttcagt
gaaacgcagacggactctcaggttgttggatatgcagaagatttgtctggacgacaaatg
attattgatagagtacgaacaaggagttctggcatgtcttga
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