Capsicum annuum (peppers): 107859070
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Entry
107859070 CDS
T04646
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107859070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107859070
03019 Messenger RNA biogenesis [BR:
cann03019
]
107859070
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107859070
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107859070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_12
Torus
Motif
Other DBs
NCBI-GeneID:
107859070
NCBI-ProteinID:
XP_016559440
LinkDB
All DBs
Position
2:117103892..117117437
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AA seq
687 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDTGPTHPTASVPVIQSADQINTAPTPAQNAAVPMGGGGQGQGQG
QGQGQGGEFVGNRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECRE
QDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPMEEVLQRIQNLTSYGYSN
RFFQNRNTNYSNQADKPQIPQVNNVMNQAVKSTAAEQPSGQQQQLQPQQVQQPQQQGAPT
QTQTLPTSQQTQADRTAIPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEA
FDSVENVILVFSINRTRHFQGLAKMTSRIGGAAKGGNWKHEHGTAHYGRNFSVKWLKLCE
LSFQKTRHLRNPYNENLPVKISRDCQELEISVGEQLASLLYLEPDSELMAISLAAESKRE
EERAKGVNPDNVNENPDIVPFEDNEEEEEEESEEEEEDESFAQAFGPAALGRGRGRGIVW
PPLVPFGRGARPFPGMRGFPPGMMNDGFSYGSMTPDGFPMPDPFGMGGRPFGPFGPRFSG
DMMFHNRPPAAGGFGMMMGPGRPPFMGGMGPGAAGPPRGGRPMGMHPSFVPPPPPPSQNP
RVKRDQRALANERNDIFNSGSEGRGQEMAGSVGAPDEGVRYPQTGNSFRNDESESEDEAP
RRSRHGDGKKKKHSIDGGDAATTGTEK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggatgatggagaaggaggattaagctttgattttgaaggcggtttagacacagggcca
acgcatccaactgcatctgtaccagtaatacaatctgcagatcaaataaacacggcccct
acccccgcccaaaatgctgcagttcctatgggcggcggcgggcaagggcaagggcaaggg
caagggcaagggcaaggaggggaatttgttggaaatcggagaagttttaggcagactgtt
tgtaggcattggttgcggtcgttgtgtatgaagggtgatgcttgtggttttttgcatcag
tatgataagtctcggatgcctgtttgtaggttttttcgactttatggagagtgtcgtgag
caagattgtgtttataagcatacaaatgaggacatcaaagagtgtaacatgtataaatta
ggattttgtccgaatggtcctgattgccggtatagacatgcaaagctgcctggacctccg
cctccaatggaagaggttcttcagagaattcagaatttgacatcctatggatactcaaac
aggtttttccaaaatcggaatactaattattcaaatcaggcagacaaacctcaaattcca
caagtaaataatgttatgaatcaagcagtgaagtctacagcagcagagcaacccagtggc
caacagcaacagttgcagccgcagcaagttcaacagcctcaacaacagggtgccccaact
caaacacaaactcttcccaccagccagcaaactcaggctgatagaactgcaatacccctg
cctcaaggaacatctaggtactttatagttaaaagctgcaaccgtgagaatcttgaattg
tcagtacaacaaggagtttgggcaactcaacgaagcaatgaggctaaactaaatgaagct
ttcgactctgtggaaaatgtcattctagttttttcaatcaatcggactaggcattttcag
ggtcttgcaaaaatgacatctagaattggtggtgctgctaaaggaggaaattggaagcat
gaacatggaactgcacattatggacggaatttttcagtgaaatggttaaagctctgtgaa
ctgtccttccagaaaactcgtcatttgaggaatccatacaatgagaacttacctgtgaag
ataagcagagattgtcaagaattagagatctctgttggtgagcagttggcttctttgctc
tatcttgaaccagacagtgaacttatggcaatctcacttgctgcagaatccaagagagag
gaggaaagagcaaagggagtaaaccctgacaatgtgaatgagaacccagatattgtacct
tttgaagacaatgaagaagaggaagaggaagaaagtgaggaggaggaggaggatgagagc
tttgctcaagcttttggaccagctgctttgggcagaggaaggggtaggggaatcgtatgg
cctcctttagttccttttggacgtggagccaggccttttcctgggatgcggggcttccct
ccaggcatgatgaatgatggattttcttatggatcaatgacacctgatgggtttcctatg
ccggatccttttggaatgggcggccgaccttttggaccatttggccctcgattctctggt
gatatgatgtttcacaaccgtcctccagctgctggcggatttgggatgatgatgggtcca
ggaaggccccctttcatgggtggaatgggtcctggagcagctggcccacccagaggtggt
cgaccaatgggaatgcatccatcatttgtcccacccccaccacctccctctcaaaatcct
agggtcaaaagggatcagagagctttggctaatgaaaggaatgatatattcaattcaggt
tcagaaggtaggggtcaagagatggcaggctcagttggtgcaccagatgaaggagtacgg
tatccacaaactggaaacagctttagaaatgatgaaagcgagagcgaggacgaagcacct
aggagatccagacatggtgatggaaagaaaaagaagcatagcatagatggaggagatgct
gcgacaactggcacagaaaagtaa
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