Capsicum annuum (peppers): 107860781
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Entry
107860781 CDS
T04646
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107860781
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107860781
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NB-ARC
MMR_HSR1
ABC_tran
AAA_16
AAA_18
RsgA_GTPase
AAA_30
MeaB
DO-GTPase2
FeoB_N
Motif
Other DBs
NCBI-GeneID:
107860781
NCBI-ProteinID:
XP_016561739
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Position
2:complement(153503611..153522170)
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AA seq
405 aa
AA seq
DB search
MAGSGGNPSSNQSSVSHQAPKILLAKPGLVTAGKFNRGGPDDDSAAHRPRLPSVGSLNLL
SDTWDFHTDRFLPFLTDNTDFTVVGVIGPPGVGKSTIMNEIYGFDAASPGTLPPFAIEAE
ETRTMAKHCTVGIEPRVSSERIILLDTQPVFSPSVLAEMIRPDGSSTIPILSGESLSAEL
AHELLSIQLGVLLASICHIILVVSEGVHDASMWQLMSVVDLLKHGVPDPSSLTLSHPQSS
EKENRDKILDSEGEYMAEPVFVHTKLRTEDLAPCNLVQLKKALSQFFCSSSFVRSENQNT
AKESQVSAVSLNDHSAGRESESLKLFLIPSRNKDDSLKPQYESHISALWNLRDQVLSKRG
SSFSRTLSERDWLKNSAKIWEIIRNSSIIMDYCRTLQSSGMFRRL
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcagtggtggaaaccccagttccaatcaatcatctgtgtctcatcaagcaccc
aaaatcctattagccaaacctggacttgttaccgctggtaaattcaaccgtggtggacct
gacgatgattctgcagctcaccgcccgcgtcttccctccgttggatctcttaatcttctc
tctgacacctgggatttccacactgatcgttttctcccgtttctaacggataacacggac
tttacagtagtgggtgtgattggtcctccaggggttgggaagtcaactataatgaatgaa
atttatggttttgatgctgcctcacctggaactcttcctccttttgccatagaagcagaa
gaaactaggactatggcaaaacattgtacggttggcattgaaccacgggtttcatctgaa
cggattatactgcttgatacacagcctgtttttagcccatcggttttggctgaaatgatt
agaccagatggctcatccaccatacccatactaagcggtgaatctttatcagctgagcta
gctcatgaactattaagtatccagcttggtgttctgctggcatccatttgtcacattata
ttggttgtatcagagggagtccatgatgctagcatgtggcaactcatgtcagtggttgat
ttgcttaagcatggtgtacctgatccatcatctttaaccctttctcatcctcaaagttct
gagaaagaaaacagagacaaaattcttgacagtgaaggagagtacatggccgaaccagtt
tttgtgcatacaaagctacgcactgaagatctagcaccatgcaaccttgtccaactgaag
aaggcactctcacagttcttttgctcatcatcttttgtgagatcagaaaaccaaaacact
gccaaagagagtcaagtttctgctgtttctctcaacgaccatagtgctggccgagaatct
gaatctttaaaattatttctaataccatctagaaataaggatgattccttgaagccacag
tatgaaagccacatatcagcgttatggaatttgcgggatcaggtattgtctaagagaggt
tcatctttctcaaggactctgtccgagcgcgattggctgaaaaattctgccaagatatgg
gaaatcattaggaattcttccattattatggactattgcagaactcttcaaagttcaggc
atgtttaggcggttatag
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