Capsicum annuum (peppers): 107862312
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Entry
107862312 CDS
T04646
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03030
DNA replication
cann03420
Nucleotide excision repair
cann03430
Mismatch repair
cann03440
Homologous recombination
cann03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107862312
03420 Nucleotide excision repair
107862312
03430 Mismatch repair
107862312
03440 Homologous recombination
107862312
03460 Fanconi anemia pathway
107862312
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cann03000
]
107862312
03032 DNA replication proteins [BR:
cann03032
]
107862312
03400 DNA repair and recombination proteins [BR:
cann03400
]
107862312
Transcription factors [BR:
cann03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107862312
DNA replication proteins [BR:
cann03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107862312
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107862312
MMR (mismatch excision repair)
107862312
DSBR (double strand breaks repair)
HR (homologous recombination)
107862312
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
SH3_Rv0428c
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
107862312
NCBI-ProteinID:
XP_016563327
UniProt:
A0A1U8FVY4
LinkDB
All DBs
Position
3:complement(252479348..252483110)
Genome browser
AA seq
615 aa
AA seq
DB search
MTKMVGPDAVSVILANPSPDSSSDLPEIIVQVLDLKPTGNRYMFSASDGKKKIKGIFQSS
LSSEVISGNIQNLGLIRVIDYTLNDIPTKNEKYLIVTKCEVVSPALEAEYKAEVKSEEMT
GIVLTPKQEETGIVLKPKQEFQTKSAAQIVHEQSGNMAPSARMAMTRRIQPLVSLNPYQG
NWTIKVRVTSKGSMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAAKKFFDKFELGKV
YYISKGTLKVANKQFKTVQNDYEMTLNENSQVEEAINEAAFIPETKFSFTPIDELGPYVN
GRELVDVIGVVQSVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWNDLATDVGQEL
LDMADKSPVVAIKSLKVGDFQGVSLSTLSKSNIVVNPDLPEAKKLRSWYDSEGKETSLAS
VGSGMSPSIKSGARSMYTDRVSLLHITSSPSLGEDKPVFFSIKAYISFIKPEQAMWYRAC
KTCNKKVTDAVGSGYWCEGCQKNDAESSLRYIMALKVSDASGEAWLSAFNEQAEKILGCS
ADELDKLKSEEGETAYQMKLKEATWVPHLFRVSVAPQEYNSEKRQRITVRAIAPVDYAAE
SKYLLEEMSKMNISM
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagatggttggcccagatgccgtttcggttattttagcaaacccatcgcccgat
tcttcttcagatctccctgaaattatcgttcaagttctggatctcaaacccactggcaac
agatacatgttttcagccagtgacgggaagaagaagattaagggtatttttcaatccagt
ttgtcatcagaagttatatctgggaacatacagaacttgggtcttattcgggttattgat
tataccctcaacgacatcccaaccaagaatgagaagtacttgattgtgactaaatgcgag
gtggtgtctcctgctcttgaagctgagtacaaggctgaagtgaaaagtgaagagatgact
ggcattgtcttgactccgaaacaggaagaaactggaattgttttgaaacctaaacaggag
tttcaaactaaatctgctgctcaaattgtgcatgaacaaagcggaaacatggcaccatct
gctcgaatggcaatgaccagaagaattcagccacttgtttctttgaatccttaccaagga
aattggaccattaaagttcgagtaactagcaaggggagtatgcgaacttacaagaatgct
agaggagaaggctgtgtgttcaatgttgaattgactgatgaggatggcacccaaatacaa
gctacaatgtttaatgaagctgcaaagaagttttttgacaagtttgaattgggaaaggtc
tattacatttcaaagggaactcttaaagttgctaacaagcagttcaagacggtacaaaat
gattatgagatgactttgaatgaaaactcccaagttgaggaggctattaatgaagcagct
tttattccagagacaaaatttagcttcaccccaattgatgaattgggtccatatgtcaat
ggcagggagcttgttgatgttattggggtcgttcaaagtgtatctccgacgatgagcata
cggaggaagagtaacaatgagacagtcccaaagcgtgacataactattgcagatgagacg
aagaagactgttgttgtgtctctctggaatgatcttgccaccgatgtaggacaagaactg
ctagacatggctgataaatccccagtagttgcaatcaaatcccttaaagttggagacttt
caaggagtgtctttatcaactttaagcaagagtaatattgttgtgaatccagatttacct
gaagccaaaaaactgagatcttggtatgattctgaaggtaaagaaacttcattggcatct
gtaggttctggtatgagcccctcaatcaagagtggggctagatctatgtacactgatagg
gtctccttgcttcatataaccagtagcccatcccttggagaggacaagcctgtgtttttc
agcattaaggcatatataagtttcattaagcctgaacaagcaatgtggtatcgagcttgc
aagacatgtaacaagaaagttacagatgctgttgggtctgggtattggtgtgaaggatgc
cagaagaatgatgcagagagcagtttgagatatataatggcattgaaagtttctgatgca
agtggtgaagcttggctctctgcgttcaatgaacaagcagagaaaatacttggatgctct
gctgatgaacttgacaagctcaaatctgaggagggagaaactgcatatcaaatgaaattg
aaggaagctacatgggttcctcatcttttccgggtcagtgttgctccacaagagtacaac
agtgagaaaaggcaaaggataacagtcagggctattgctccagttgattatgctgcagaa
tccaagtacttgcttgaagagatgtctaagatgaatatttctatgtaa
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