Capsicum annuum (peppers): 107862950
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Entry
107862950 CDS
T04646
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann04120
Ubiquitin mediated proteolysis
cann04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107862950
04120 Ubiquitin mediated proteolysis
107862950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cann04121
]
107862950
Enzymes [BR:
cann01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107862950
Ubiquitin system [BR:
cann04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107862950
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
107862950
NCBI-ProteinID:
XP_016564153
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All DBs
Position
3
Genome browser
AA seq
529 aa
AA seq
DB search
MMRLQTYAGLSLIATLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQL
TKKIFLGPLREAEVERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTVLLLIKGLHWLA
QKRVEYIETTPTVTRLSHIRIVSFLGFLLLIDSLFLYDSVNYLIQTRQASVSLFFAFEYM
ILATTTVSTFVKYLFYISDMLMEGQWENKPVYTFYLELIRDLLHLSLYLCFFMVIFMNYG
VPLHLIRELYETFRNFKIRVADYVRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPAENGTNVVGSRPDVQQGPGPSGASA
SQNSQADSTPNNNVSQHQARIQAAAAAAAVYQKSFVYPSVPTLAWSPGYAPVPPSYSPAG
SSSNVLSDGERALNEQSLQDQLANMPLAQYQCGFLPFQNPGANNLSIPKAQLEAHKTLLQ
QQIEVLQTQLKILENPNTHKKADDLGSSDSKGKAIPSESSRGQSEGAEF
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggttacaaacttatgcagggcttagcttaatagctacactagccgttatttat
catgcctttaatagcagaggccaattttacccagcaatggtttatctgtcaacgtccaag
atcagtctggtgcttcttctcaatatgggtcttgttgtgatgtgcattttgtggcagttg
acaaagaaaattttccttggtccccttcgagaggctgaggtggagaggctgaacgagcag
tcttggcgggaactcatggaaatactttttgccatcacgattttccgtcaggacttctct
gttacatttcttgcaatggtaactgtgctcttgcttattaagggtttgcactggttggct
caaaagagagttgaatacatagaaacaactccaactgttactaggttgtctcacattcgc
atagtttccttcctgggttttctcctcttaatagacagtctctttttgtacgactccgtg
aactatttgatacagacaagacaggcatcggtatctctcttctttgcatttgagtacatg
atacttgcaacaacaactgtctcaacttttgtaaaatatctcttctacataagtgacatg
cttatggaaggacaatgggagaataagcctgtctatactttctacttggaacttattcga
gacttgctccacttgtctctgtacttgtgcttcttcatggtgattttcatgaactatggt
gtgcccctgcatttgattcgggagctttatgagacattccgcaacttcaagattcgagtt
gccgattatgtacgctatcggaagattacttcaaatatgaatgaccgttttccagatgct
acaccagaagagctcaatgcaagtgatgctacctgcattatttgtcgtgaggagatgacc
actgctaaaaaacttatttgcgggcatctgtttcatgtgcattgtctccgttcatggtta
gaacgtcagcacacctgtcctacctgcagagcccttgttgtgccagctgaaaatgggaca
aatgtggtaggatcacgaccagatgtgcaacaaggtcctggaccaagtggggcaagtgca
tctcagaactcacaagcagatagcacgccaaataataatgttagccagcaccaagctaga
atccaagctgctgctgcagcagcagcagtttatcagaagtcttttgtttatccttctgta
ccaacactagcgtggtctcctggatatgctccagttcctccgtcctatagtccagcgggc
agttcttccaatgtgctctcagatggggaacgggcattgaatgaacaatcactgcaggat
caattagcaaatatgcccttggctcaatatcaatgtggttttctcccttttcaaaatccc
ggtgctaacaaccttagtattccaaaggctcaactagaggcccataaaacacttttacaa
caacaaattgaggttctgcaaacgcagctcaagattttagagaatccaaacacacacaaa
aaagcagatgatttaggaagttctgatagtaagggaaaagcaattccgtcagagagttct
cgaggacaatccgaaggtgcagaattttga
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