Capsicum annuum (peppers): 107862994
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Entry
107862994 CDS
T04646
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107862994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cann04121
]
107862994
03036 Chromosome and associated proteins [BR:
cann03036
]
107862994
Ubiquitin system [BR:
cann04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107862994
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
107862994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_WDR3_1st
WD40_Gbeta
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR41
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR35_TULP_N
EIF3I
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
107862994
NCBI-ProteinID:
XP_016564215
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All DBs
Position
3:complement(233031741..233036892)
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AA seq
342 aa
AA seq
DB search
MENSSQESHLRSENSVTYDSSYPIYALAFSSFTSSLPNRRRHLAIGSFIEEFNNRVDILS
FDEDSHTLKPIPNLSFDHPYPPTKLMFHPNPSGSLKSNDVLASSGDYLRLWEVRETSVEP
LFAFNNAKTSEYCAPLTSFDWNEVEPRRIGTSSIDTTCTIWDVEKGAVETQLIAHDKEVY
DIAWGEAGVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL
MDSNKVVILDIRSPAMPVAELERHQASVNAIAWAPQSCRHICSAGDDGQALIWELPTVAG
PNGIDPMSMYSAGAEINQIQWSAAQRDWIAIAFSNKLQLLKV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattcaagccaagaatcccatctccgatccgaaaactccgtcacatacgactcg
tcctaccccatctacgccctcgccttttcctccttcacctcttctcttcccaaccgccgc
cgccacctcgccatcggcagctttatcgaagaattcaacaaccgcgtcgacattctctcc
ttcgacgaagacagccatacccttaaacccattccaaatctctctttcgatcacccttat
ccgcccacgaagctcatgttccatccgaatccttctgggtctctcaagtcgaacgacgtg
ctagcgtcctctggtgattatctccggctctgggaagttcgggagacttctgtagagccg
cttttcgcttttaataatgcgaagacgagtgagtattgtgctccgttgacgtcttttgat
tggaatgaagtggagcctagaagaattgggacttcgagtattgatactacgtgtacaatt
tgggatgttgagaaaggggctgtggagacacagttgattgcccatgataaagaggtttat
gatattgcttggggtgaagctggggtttttgcttcggttagtgcggatggatcggttagg
attttcgatttgagggataaggagcattcgacgattatttatgagagtccacaaccggat
actccgttgttgagattggcgtggaacaagcaagatttgaggtatatggctactatattg
atggatagtaataaggttgtgattttggatattaggtctccggcaatgcctgtggcagag
ttggaaaggcatcaagcgagtgtgaatgcgattgcttgggctccgcagagttgtagacat
atttgttctgctggtgatgatgggcaggcgcttatttgggagttgcctactgttgcaggg
cctaatgggattgatcctatgtcaatgtactctgctggagctgagattaatcaaattcag
tggtctgctgcgcagcgtgattggattgccattgccttttccaacaagttgcagctgctt
aaagtataa
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