Capsicum annuum (peppers): 107863305
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Entry
107863305 CDS
T04646
Name
(RefSeq) single-strand DNA endonuclease 1 isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
107863305
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107863305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Chromo_2
Motif
Other DBs
NCBI-GeneID:
107863305
NCBI-ProteinID:
XP_047265302
LinkDB
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Position
3:212789111..212797187
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AA seq
631 aa
AA seq
DB search
MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWIVQLHNVNKSHCAMKEKLYLRGLFHR
LRALIALNCSLIFVTDGAIPAIKASTYRRRLNPGNVLTQDEAIKLSSIRRNTGSEFSRMI
KEAKVLGNALGIPCLDGIEEGEAQCALLNSESFCDGCFTADSDAFLFGARTVYRDICLGD
GGYLVCYEMDDIERKLGLGRNSLITLAVILGGDYSEGVYGIGRESACQIVKSIGDKAVLQ
WIASEGFSFAKKKKGSKRQNEDDKYNGKENAAQYKNPDGSKCPSQMKSQVLQVLDAYLRP
KCHLANSDAVQRILALYPYSRSQLQQICTEMFDWPPEKTDEYILPKIAERELRRFANLRS
TALRVGVQVPLIEMPIKCPLSRIIKPRKNQGVDCFEVSWEEMDGLETSIVPADLVERACP
ERILEYQERRAQRKKRNNARSRPRRLEKAQLLGQVDKELQDLLLEVYRDDFTTDDTAFLC
GSVSEDDEGIAQIQGTIQSNDTWNSNYVKKDAFTSGSASNQESNILPASFEDEVIDTGNS
VCREKVDFTYESCSCQESNILPASSEDEVIDLTRSPPPQHASGKSKHLEDNVQRIDLIEL
SDSENDTFSPEHSRRARELRMFIAGIKDNSY
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaaagaatctctgggatatcttggaatcttgcaagaaaacacttcctcttcat
catctacagaacaagagggtatgcatagatctttcttgctggattgttcaacttcacaat
gtcaacaaatctcactgtgccatgaaggagaagctctatctcagaggcctctttcaccgc
ctcagagctctcattgccttgaattgtagtctcatttttgtcactgatggagccattcct
gctatcaaagcatctacttatcgaaggcgtttaaatcctggaaatgtgctcactcaagat
gaggcgattaaactgtcatcaatacgaagaaacacaggatctgaattttctcgcatgata
aaagaggctaaagtccttggaaatgcacttggaattccgtgcttagatgggattgaggag
ggtgaagctcagtgcgcattgttaaactctgaatcattctgtgatggatgtttcacagca
gattctgatgccttcctatttggagcaaggacagtgtatagggatatttgccttggggat
ggcgggtatctagtttgctatgaaatggatgatattgagagaaagctcggactcggaagg
aactccttgataacactggctgttattcttggtggtgattactctgaaggagtttatggc
attggtcgggagtcagcttgtcagattgttaaatcgattggtgataaagctgttcttcaa
tggattgcatcagaaggattttcctttgcaaagaagaaaaaaggttctaagagacagaat
gaagatgataaatacaatggtaaagaaaatgctgcacagtataaaaatcctgatggaagc
aaatgcccttcgcaaatgaaaagtcaggtgttgcaagtattagatgcttatctgagacca
aagtgccatttagcaaattctgacgctgtacaaaggattcttgcattgtatccatatagc
cgcagccagcttcagcaaatatgcactgaaatgtttgattggcctcctgagaagacagat
gagtatatccttcctaagattgctgaaagggaactgcggagattcgccaacttgcggtcc
actgcattacgtgtgggagtccaggttccactaattgagatgccaataaagtgtccttta
tctcgaattatcaagccgagaaaaaatcaaggagtggattgcttcgaggtgtcttgggaa
gagatggatggacttgaaacctctatagtaccagctgatctcgttgagagggcttgtcca
gaaaggattttggagtatcaagaaagaagagctcaacgaaagaaaagaaataatgctaga
tcaagaccaaggagactagaaaaagcacagctcttgggtcaagtggataaggaactccaa
gacctcttgcttgaggtttatagagatgactttaccactgatgataccgcttttttgtgt
ggatcagtatcagaggatgatgaaggcattgctcaaattcagggtactatacagtccaat
gatacatggaatagcaactatgtaaagaaggatgcttttacttctgggagcgccagtaac
caagagagcaacattttaccagcttcatttgaagatgaagtaattgatacaggcaatagc
gtgtgtagggagaaggttgattttacttatgagagctgcagttgccaagagagcaacatt
ttaccagcttcatctgaagatgaagtaattgatctaacgaggagtccaccaccgcagcat
gcttctgggaagtccaaacacctagaggataacgttcaacgaattgatctgattgagctt
agtgattcagaaaatgatacgttctcccctgaacattcaaggagagccagagaactgaga
atgttcattgcgggaattaaggacaacagctactga
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