Capsicum annuum (peppers): 107863573
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Entry
107863573 CDS
T04646
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107863573
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107863573
Spliceosome [BR:
cann03041
]
Complex A
U1 snRNP components
U1 related factors
107863573
Complex B
107863573
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
DUF6398
Motif
Other DBs
NCBI-GeneID:
107863573
NCBI-ProteinID:
XP_047256011
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Position
11:complement(235833563..235903028)
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AA seq
591 aa
AA seq
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MTEMERADASTGWREFTSPERRKYYYNKVTRTSKWRMPDEVKLAHEKDTISHASDFGSIS
VVKISSPGADGLLVSAHGAKSSLIAMSPTANLPTIVASESLSLSGKVSSPMIEIVEVKNS
SEPASPAVANSEKIGIAATLGNSFAPSAAETTTTQDAVVYDDGFSLENRENVKKDTAITE
IGGATPLDEKTVKLGPLVYESKAEAKSVFKILLESANIGSDCTWDQAMREVINNWRYGAL
KSLCERKQAFNEYLSQKKKLEAEERRVKQKKAREDFRIMLEDCKELSPSSRWSKAISIFE
HDERFKAVERAKDREDLFEDYVVELEKKEHAKALKEQKRNRVEYLEFFKSCDFINASSQW
RKVQDRLETDERCSRLEEIDCLEIFQEYIRDLENEEEEQRKLRMEELRKVERKNRDEFQK
LMEEHVAAGILNAKTNXHDYCIKIKDFAAYLAVSSNTLGSTAKDLITDVMDKLEKRYLDD
KSQIKDAVRMAEIGLTSTWMLDDFKVAIAKYISSPPMSDTNLNFVFEELLERAREKEEKE
AKKCKRLADEFYELLHASKEITASSKWEDCKSLFGDRQVASFSFIDLELVT
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaatggagagggcagacgcatcaactggatggagagaatttacaagtcctgag
cgaagaaagtattactacaacaaggttactagaacgtccaaatggagaatgcctgatgaa
gtcaagttggctcatgaaaaggacaccatttcgcacgcttctgattttggatctatttct
gttgttaaaatatcatccccgggtgcagatggtttattagtctcagcacacggtgctaaa
tcaagcctaattgctatgtcaccaactgctaacttaccaactattgtggcttcagaatca
ttaagtttatctggtaaggtttcttctccgatgattgaaatagtcgaagtgaagaattct
tcagaacctgcttcaccagctgttgctaattcggagaaaattggaatagcagcaaccttg
ggaaattctttcgcgccatcggctgctgagactactacaactcaagatgcagtagtgtat
gatgatggattttctttggagaatagagagaatgtcaagaaagatactgcaataactgaa
atcggaggtgctactccattagatgagaaaacagtcaagttgggaccattagtttatgag
agcaaagcggaggcaaagagtgtattcaaaattcttttggaatctgcaaatattgggtct
gattgcacgtgggatcaggccatgagagaagtaattaataactggagatatggtgctcta
aaatccctttgtgagcggaagcaagcttttaatgagtatctgagccaaaagaaaaaactg
gaagctgaagagaggcgtgttaaacagaaaaaagctcgggaagatttcaggataatgtta
gaagattgcaaggagctgtcaccatcgtcaagatggagtaaggcaatctccatattcgaa
catgatgaacgttttaaagctgttgagcgagctaaagaccgtgaggacctttttgaagat
tatgtggtggaacttgagaaaaaggagcatgcgaaggcattgaaggagcagaagcgcaat
agagtggagtacttagaattttttaaatcatgtgactttattaacgccagtagccagtgg
cggaaagttcaggaccgcttggaaactgatgaaagatgctcccgccttgaggaaatcgat
tgcttggaaattttccaggaatatatacgtgatttagagaacgaagaggaggagcaaagg
aaactgcggatggaagaattgaggaaagttgaacgtaaaaatcgtgatgagtttcaaaaa
ctaatggaagagcatgttgctgcgggaatacttaatgcaaaaactaactagcatgattat
tgcatcaaaattaaagattttgctgcatatctagctgtctcatcgaatactttaggatca
acagcaaaagacttaattacagatgttatggataagctggagaaacggtatcttgatgac
aagtcacaaattaaagatgcagttaggatggccgagattggattgacatcaacctggatg
cttgatgattttaaggttgcaatcgccaagtatattagctctccaccaatgtcagatacc
aacttaaattttgtctttgaggagttactggaaagggccagggagaaagaagaaaaagaa
gctaaaaagtgtaaacgtctagcagatgagttctatgaacttcttcatgcatcaaaggaa
attactgcatcatcgaaatgggaggactgcaaatccctcttcggagataggcaagtagct
tctttttcttttattgatctagaattagtaacatga
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