Capsicum annuum (peppers): 107863592
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Entry
107863592 CDS
T04646
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cann03009
]
107863592
03012 Translation factors [BR:
cann03012
]
107863592
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107863592
5.6.2.5 RNA 5'-3' helicase
107863592
Ribosome biogenesis [BR:
cann03009
]
Eukaryotic type
Other ribosome biogenesis factors
107863592
Translation factors [BR:
cann03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107863592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
AAA_19
Viral_helicase1
AAA_22
DEAD
ResIII
AAA_16
nSTAND3
RuvB_N
UvrD-helicase
AAA
PhoH
UvrD_C_2
ABC_tran
PIF1
AAA_25
NPHP3_N
AAA_33
AAA_7
AAA_5
ATPase
Zot
SLFN-g3_helicase
TsaE
RE_TdeIII
AAA_24
Motif
Other DBs
NCBI-GeneID:
107863592
NCBI-ProteinID:
XP_016565069
LinkDB
All DBs
Position
3:complement(158470617..158525863)
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AA seq
660 aa
AA seq
DB search
MEKGKSTSKNKKKNRPASSSAITKEQFVSTMTPLIDLEKGAELSVSMCSAETRSLDSAQK
KGSTILNLKCVDVQTGLMGKTLLEFQSNKGDILPPHKFGTHDIVVLKPSKAVLGCPALGQ
GVVYRLKDSSITVAFDDVLEEGLNNPLRLEKLVNEVTYRRMKDTLIQLSKGVLKGPASNL
VPVLFGERQPTMSKKDVNFTPLNRNLDHSQKDAISKALSSKDVFLLHGPPGTGKTTTVVE
IILQEVERGSKILACAASNIAVDNIVERLVPHRVKLVRLGHPARMLPQVLDSALDAQVLR
GDNSALANDIRKEMKALNGKLLKAKDRNAKRDIRRELKSLSREERKRQQLAVADVIKNAD
VVLTTLTGALTKKLDGLSFDVIIIDEAAQALEIACWIALLKGSRCILAGDHLQLPPTIQS
VEAEKKGLGKTLFERLADLYGDEIMSMLTVQYRMHELIMNWSSGELYENKIEAHSSVASH
MLYHLEDVKKSPSTENALLLIDTAGCDMEEKKDEEDSTLNEGEAEVAIVHAKRLVESGVQ
ASDIGLITPYAAQMVVQVVFLKTLKSYVEKLKEMEISTVDGFQGREKEAIIISMVRSNSK
KEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSGDKFLKRLIEYFEEHGEYLSASECGND
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggagaaagggaaaagcaccagcaagaacaagaaaaagaacaggccagcatcctcaagt
gccataactaaggagcaattcgtttccaccatgacccctttaattgatttggaaaagggt
gctgaactatcagtttctatgtgctctgctgaaacgaggagtttggattctgctcagaag
aagggctctactattcttaatttaaagtgtgttgatgtccagacaggtttaatgggcaag
acgcttctggagtttcaatcaaacaaaggggacatccttccgcctcacaagtttggcact
catgacattgttgttctgaaaccaagcaaagctgttttaggatgtcctgcacttggacag
ggagttgtctacagactaaaggactcatctattactgttgcatttgatgatgtcctagaa
gaaggtctgaataatcctttacgccttgagaaactggtaaatgaggtgacttaccgtcgg
atgaaagacacattgatacaattgagtaaaggtgtgctgaaaggacctgcctctaactta
gttcctgtcctttttggggagagacaaccaacaatgtctaagaaggatgtcaatttcact
cctttaaatcgcaaccttgatcactcgcagaaagatgccatttcgaaggcgctttcatcc
aaggatgtatttttgctgcatgggcctcctggaactgggaaaacaaccactgttgttgag
attattttgcaggaagtcgaacgtggttcaaagattcttgcatgtgctgcttcaaatatt
gctgttgataacattgttgagagacttgttccacacagagtgaaattggtgagattggga
catcctgcacgtatgcttccacaagtattggacagcgctctagatgcccaggttctacgt
ggtgataatagtgctcttgcaaatgacatccgcaaggagatgaaggcattgaatgggaaa
ttattaaaagctaaagatagaaatgcaaagagggacatcaggcgggaactcaagtctctt
tccagagaagagcgtaaaagacagcagctagcagtagcagatgttattaagaatgcagat
gtagtgctgacgacattgactggggcattgaccaaaaagctggatggtttatcatttgat
gtgattattattgatgaagctgctcaggcactggaaatagcatgctggattgctttattg
aagggttcaaggtgtatattggctggagaccatctccagcttcctccaaccattcaaagt
gtagaagcagagaagaaagggctgggaaagacacttttcgaacgtttagcagatttatat
ggagatgaaatcatgtcaatgctcactgttcagtatcgcatgcatgaactgattatgaac
tggtcatctggagagctgtatgaaaataagattgaagcccattcaagtgttgctagccat
atgctatatcaccttgaggatgtgaagaaatcaccttccacagaaaatgcccttctactc
atagacacagctgggtgtgacatggaagaaaaaaaggatgaggaagatagcacattaaat
gaaggtgaagctgaggttgccattgtccatgcaaagagacttgttgaaagtggagtccaa
gcttctgatattggactaatcactccttatgcggcacagatggttgtgcaggtcgttttc
ttgaaaactctcaaaagctatgtagaaaaattaaaagaaatggagatttccactgttgat
ggtttccagggtcgagaaaaagaagctattatcatttctatggttcgatcaaactcaaag
aaagaggtgggatttcttagtgacagaaggagaatgaatgttgctgtgacacgagcaagg
agacagtgctgtcttgtatgtgatactgagacagtcagtggtgataaattcttgaagagg
ttgattgagtactttgaggagcatggtgaatatttgagtgcgtctgagtgcggaaatgat
tag
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