Capsicum annuum (peppers): 107863914
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Entry
107863914 CDS
T04646
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107863914
09123 Folding, sorting and degradation
03018 RNA degradation
107863914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107863914
03041 Spliceosome [BR:
cann03041
]
107863914
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107863914
mRNA degradation factors
5'-3' decay
Lsm complex
107863914
Spliceosome [BR:
cann03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107863914
Complex C
U2 snRNP components
107863914
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
LSM14
Motif
Other DBs
NCBI-GeneID:
107863914
NCBI-ProteinID:
XP_016565599
LinkDB
All DBs
Position
3:38154120..38159717
Genome browser
AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDEDKYPHMRSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttctcatatttcaaggatctagtgggcagagaagtgactgtggaactgaag
aacgatttggctattcgaggaacactgcattcagttgatcagtatctcaacattaagctt
gaaaacacgagggttgttgatgaggacaagtacccccacatgaggtcagtgaggaactgt
tttatcagaggatcggtggtgagatacgtgcagttacctccagatggagttgacatagaa
ctgcttcatgatgctacgaggagagaagctcggggtggctga
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