Capsicum annuum (peppers): 107863923
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Entry
107863923 CDS
T04646
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107863923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107863923
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107863923
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
107863923
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
107863923
NCBI-ProteinID:
XP_016565611
UniProt:
A0A1U8G2K7
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All DBs
Position
3:complement(37363502..37372199)
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AA seq
330 aa
AA seq
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MSKSKLRGIQLSFSNTQKLRLEKALEQLESISSKLNSNATVIVADTIPVDEDAALKGHGT
LDMGRNVIATVCGVVERVNKLVYVRSLRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQD
AVLMLSSMNLPDGIQRRRTAIDELNMRTIFVENDVICAEVRGFQNDGSLHLQARSQKYGK
LENGKLLKIPPYLVKRRKQHFHHLDQYGVDLIFGCNGFIWVGEHVDVKDATVEDQVNKSD
PQNTDSAILQGSSEEPTSTSLEIRQYICRIANAITVFAALGFMVNLEAVTETVTLSLSLN
LGVHEMLEAEFHVQVAEQEVERRSKSTRRK
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaatcaaagctgagagggatacaattatcattcagcaacacccaaaagctaaga
ttagaaaaggcattagaacaattggagtccatttcttcgaagcttaattccaatgccact
gtcattgttgccgacaccattcccgttgacgaagatgccgccctcaaggggcatggtacg
ttggatatgggcaggaatgtgatagcaactgtttgtggagttgttgagcgcgtgaacaag
cttgtttatgttagatctctaagggcaaggtataagccagagataggtgatattatagtt
ggccgtgttattgaggttgctccaaagagatggagattggaaattaatttcagccaagac
gcagtactaatgctctcctcgatgaatcttccagatggtattcagaggcggcgaacagca
attgatgaactcaatatgcgaaccatatttgtggagaatgatgtcatctgtgctgaagtc
cgtggtttccagaatgatggaagtctacacctccaagctcggagccaaaagtatggaaag
cttgaaaatgggaaactactcaaaatccctccatatctagtgaaaaggcgtaaacaacat
ttccaccatctagatcagtatggagttgacttgatttttggctgcaatggatttatttgg
gttggggaacacgttgatgtaaaagatgccacggtggaggatcaagtaaataagtctgac
ccacagaacactgattcagcgatcttacagggttctagtgaagaaccaacttcgacatca
ctggaaataagacaatatatatgcaggatagcaaatgccatcacggtattcgctgcttta
ggtttcatggttaatttggaagctgtgacggagacagttaccctgagcttatctttgaac
cttggtgtacatgagatgcttgaagcagaattccatgttcaagttgctgagcaagaagtt
gaacgacggagcaaatctactagaaggaagtag
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