KEGG   Capsicum annuum (peppers): 107864357
Entry
107864357         CDS       T04646                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
  KO
K13117  ATP-dependent RNA helicase DDX35 [EC:5.6.2.6]
Organism
cann  Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:cann00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cann03041]
    107864357
Enzymes [BR:cann01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     107864357
Spliceosome [BR:cann03041]
 Complex C
  Other components
   Complex C specific factors
    107864357
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_C DEAD AAA_22 HA2_N AAA_19 AAA_30 ResIII AAA_29 AAA_7 AAA_11 nSTAND3 AAA_16 AAA_23
Other DBs
NCBI-GeneID: 107864357
NCBI-ProteinID: XP_016566197
LinkDB
Position
3:complement(2478975..2495666)
AA seq 692 aa
MSQFWKPGSERPRLVDDEEGGVLLYATSSSSSSSGFGYGSLEKQRQRLPVYKYKTAILYS
VETHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRMIACTQPRRLAVQAVATRVAEEMDV
KLGEEVGYTIRFEDITNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTD
ILLGLLKKIQRRRPELRIIISSATIEAKSMAAFFNTSRRRCEQEQGPIKEPAILSVEGRG
FNVEIFYVEDPVSDYVWAAVSTVMSIHDQERMGDILVFLTGQDDIDAAIQLLTEEAQSSG
KQGLVTVPLYSGLPRADQDLVFSPTPKGKRKVIFSTNIAETSLTLEGIVYVVDSGFSKQR
FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCFRLYTEDYFSKEMSVVGIPEIQRS
NLVSCVIQLKALGIDNILGFDWPASPSAESMIRALEVLYSLGVLDDDAKLTSPTGFQVAE
IPLDPLISKMILASYEFGCSEEIITIAAVLSIQSIWIPVRGVQKQLDEAKLKFAAAEGDH
VTFLNVYKGFIQSNKSSKWCHKNFINYHAMRKVIEVREQLKRITQRLGIGLKSCEGDIQA
VRKAITAGFFANAARLEPFSHNGMYKTVRTSQEVYIHPSSVLFRVNPKFIVYHSLVSTDR
QYMRNVITIDPSWLTEAAPHFYQKQLHSSVPQ
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgtcacaattttggaaaccaggaagtgaaaggcctcgacttgttgatgatgaagaaggt
ggcgttcttctctacgctacctcttcttcctcctcttcctcaggatttgggtatgggagt
ttagagaagcaaaggcaaaggctgcctgtgtacaagtacaaaactgctattctttactca
gtggagactcatgctactaccattattgttggagaaactggaagtggaaaaaccacccaa
attcctcagtacctgaaagaagctggttgggctgagggagggcgcatgatagcttgcact
caaccaaggagactggccgtccaggcagttgctacaagagttgccgaagaaatggatgtt
aaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaatta
actagggtcaaatttcttactgatggagttctgctgagggaaatgatggatgatcctctg
ttgagtaagtatagtgtgattatggtagatgaagctcatgaaaggtctctctcaacggac
atcttattgggactactgaaaaagattcaaaggcgtcgccctgaactgcgtattataata
tcatcagctacgattgaagcaaaatcaatggctgctttctttaataccagcagaagacga
tgcgagcaggagcaaggaccaattaaagaacctgctattctgtcagttgagggtagggga
tttaatgttgagatattttatgttgaagatcccgtttctgattatgtttgggccgctgtt
tcaacagtgatgtcgatccatgaccaggaacggatgggagatattctggtgtttctcact
ggtcaagatgatattgatgctgcaatacagttgcttactgaagaagcgcaaagtagtggg
aagcaaggactggttactgtgccactatactcgggacttcctcgagcagatcaggacctt
gtgttttcccctactcccaaaggaaaaagaaaagtgatattttcaacaaatattgctgag
acgtcgttgactctagagggtattgtctatgttgttgatagcgggttctcaaaacaacgt
ttttacaacccgatttcagatattgagaatttggtagtggcaccaatatcaaaggcatct
gctcgacaaagggctggtagagctggaagagttcgaccaggaaagtgttttaggctctac
acagaagattatttttccaaagagatgtctgtggtgggaatcccggagatacagagatca
aacctcgtttcctgtgtcatccagttgaaggccttaggaatcgataatatcttaggtttt
gattggccagcatccccatcagctgaatcgatgatcagagcacttgaagtactgtattct
cttggagtactagatgacgacgccaaacttacttcacctactggatttcaagttgccgag
attccactggacccattaatatctaaaatgatattggcttcttatgagtttggatgttct
gaggaaataattaccattgctgctgtgctctccatacagtctatttggattcctgttaga
ggagtacagaaacagttggatgaagcaaaattgaaattcgcagctgccgagggtgaccac
gtcacattcttaaatgtgtataaaggattcattcagtctaacaaatcttcaaaatggtgt
cacaagaattttataaattatcatgccatgagaaaagtaattgaagttagggaacagctg
aaaaggattacacaacggttgggcataggattgaaatcttgtgaaggggatattcaggca
gtaaggaaggcaattacggcagggttttttgccaatgctgcccgtttagaaccattcagt
cacaatgggatgtacaagactgtcagaacttctcaagaagtttatattcatccttcatct
gtgctgttcagggtcaacccaaagtttattgtgtaccattctcttgtttcaactgatcgt
cagtacatgcgaaatgtcattactatcgatccttcttggctaacggaggctgcaccacat
ttttaccagaagcagctgcatagttctgttcctcaatga

DBGET integrated database retrieval system