Capsicum annuum (peppers): 107864357
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Entry
107864357 CDS
T04646
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107864357
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107864357
Spliceosome [BR:
cann03041
]
Complex C
Other components
Complex C specific factors
107864357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_30
ResIII
AAA_29
AAA_7
AAA_11
nSTAND3
AAA_16
AAA_23
Motif
Other DBs
NCBI-GeneID:
107864357
NCBI-ProteinID:
XP_016566197
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All DBs
Position
3:complement(2478975..2495666)
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AA seq
692 aa
AA seq
DB search
MSQFWKPGSERPRLVDDEEGGVLLYATSSSSSSSGFGYGSLEKQRQRLPVYKYKTAILYS
VETHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRMIACTQPRRLAVQAVATRVAEEMDV
KLGEEVGYTIRFEDITNEELTRVKFLTDGVLLREMMDDPLLSKYSVIMVDEAHERSLSTD
ILLGLLKKIQRRRPELRIIISSATIEAKSMAAFFNTSRRRCEQEQGPIKEPAILSVEGRG
FNVEIFYVEDPVSDYVWAAVSTVMSIHDQERMGDILVFLTGQDDIDAAIQLLTEEAQSSG
KQGLVTVPLYSGLPRADQDLVFSPTPKGKRKVIFSTNIAETSLTLEGIVYVVDSGFSKQR
FYNPISDIENLVVAPISKASARQRAGRAGRVRPGKCFRLYTEDYFSKEMSVVGIPEIQRS
NLVSCVIQLKALGIDNILGFDWPASPSAESMIRALEVLYSLGVLDDDAKLTSPTGFQVAE
IPLDPLISKMILASYEFGCSEEIITIAAVLSIQSIWIPVRGVQKQLDEAKLKFAAAEGDH
VTFLNVYKGFIQSNKSSKWCHKNFINYHAMRKVIEVREQLKRITQRLGIGLKSCEGDIQA
VRKAITAGFFANAARLEPFSHNGMYKTVRTSQEVYIHPSSVLFRVNPKFIVYHSLVSTDR
QYMRNVITIDPSWLTEAAPHFYQKQLHSSVPQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaattttggaaaccaggaagtgaaaggcctcgacttgttgatgatgaagaaggt
ggcgttcttctctacgctacctcttcttcctcctcttcctcaggatttgggtatgggagt
ttagagaagcaaaggcaaaggctgcctgtgtacaagtacaaaactgctattctttactca
gtggagactcatgctactaccattattgttggagaaactggaagtggaaaaaccacccaa
attcctcagtacctgaaagaagctggttgggctgagggagggcgcatgatagcttgcact
caaccaaggagactggccgtccaggcagttgctacaagagttgccgaagaaatggatgtt
aaacttggtgaggaagttggttatactattcgatttgaagatatcacgaatgaggaatta
actagggtcaaatttcttactgatggagttctgctgagggaaatgatggatgatcctctg
ttgagtaagtatagtgtgattatggtagatgaagctcatgaaaggtctctctcaacggac
atcttattgggactactgaaaaagattcaaaggcgtcgccctgaactgcgtattataata
tcatcagctacgattgaagcaaaatcaatggctgctttctttaataccagcagaagacga
tgcgagcaggagcaaggaccaattaaagaacctgctattctgtcagttgagggtagggga
tttaatgttgagatattttatgttgaagatcccgtttctgattatgtttgggccgctgtt
tcaacagtgatgtcgatccatgaccaggaacggatgggagatattctggtgtttctcact
ggtcaagatgatattgatgctgcaatacagttgcttactgaagaagcgcaaagtagtggg
aagcaaggactggttactgtgccactatactcgggacttcctcgagcagatcaggacctt
gtgttttcccctactcccaaaggaaaaagaaaagtgatattttcaacaaatattgctgag
acgtcgttgactctagagggtattgtctatgttgttgatagcgggttctcaaaacaacgt
ttttacaacccgatttcagatattgagaatttggtagtggcaccaatatcaaaggcatct
gctcgacaaagggctggtagagctggaagagttcgaccaggaaagtgttttaggctctac
acagaagattatttttccaaagagatgtctgtggtgggaatcccggagatacagagatca
aacctcgtttcctgtgtcatccagttgaaggccttaggaatcgataatatcttaggtttt
gattggccagcatccccatcagctgaatcgatgatcagagcacttgaagtactgtattct
cttggagtactagatgacgacgccaaacttacttcacctactggatttcaagttgccgag
attccactggacccattaatatctaaaatgatattggcttcttatgagtttggatgttct
gaggaaataattaccattgctgctgtgctctccatacagtctatttggattcctgttaga
ggagtacagaaacagttggatgaagcaaaattgaaattcgcagctgccgagggtgaccac
gtcacattcttaaatgtgtataaaggattcattcagtctaacaaatcttcaaaatggtgt
cacaagaattttataaattatcatgccatgagaaaagtaattgaagttagggaacagctg
aaaaggattacacaacggttgggcataggattgaaatcttgtgaaggggatattcaggca
gtaaggaaggcaattacggcagggttttttgccaatgctgcccgtttagaaccattcagt
cacaatgggatgtacaagactgtcagaacttctcaagaagtttatattcatccttcatct
gtgctgttcagggtcaacccaaagtttattgtgtaccattctcttgtttcaactgatcgt
cagtacatgcgaaatgtcattactatcgatccttcttggctaacggaggctgcaccacat
ttttaccagaagcagctgcatagttctgttcctcaatga
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