Capsicum annuum (peppers): 107866739
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Entry
107866739 CDS
T04646
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107866739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107866739
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
107866739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_11
TPR_2
TPR_17
TPR_16
TPR_8
TPR_14
TPR_19
TPR_12
TPR_7
TPR_9
TPR_15
TPR_6
ARM_TT21_C
BTAD
UNC80_C
TPR_NPHP3
TPR_10
HisKA_2
Motif
Other DBs
NCBI-GeneID:
107866739
NCBI-ProteinID:
XP_016568179
LinkDB
All DBs
Position
4:231214550..231238841
Genome browser
AA seq
1187 aa
AA seq
DB search
MGEEDDTAAAIRGLEEAVISEPGDPCLHFDLGMLLWDKAASAGGGGGGELREKAAQHFLT
AAKLNPQNAAAFTYLGHYYARVSLDSQRAIKCYQRALSLNPHDSIAGEAICDLLDSTGKE
TLQIAVCREASDNSPRAFWAFSRLGYLLVNQNKWSEAAQCLQQAIRGYPTCADLWEALGL
SYQQMGMFTAAVKSYGRAIELEESRVFALVESGNVYLMLGSFRKGIEQFRQALQISPMNL
SAHHGLASALLSLAKESIDSGAFKLGASLLEEASKVALASTSIVGNISCAWKLLGDIQVT
YAKCFPWMDEGMGLGADENSFTSLILSWKRMCCVAVRSACCSYQRALHLSPWQANVYTDV
AIASELLFSLRENSKADMNSWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFI
RALQLDVSLAVAWAHLGKLYRLEGESQLSQLAFDRARSIDPSLSLPWAGMSADASARNMK
PDEAYECCLRAVQIFPLAEFQTGLVKLALHSGYLQSPEAFGAIQQALQRAPQYPESHNLK
GLVCEARSDYDSAVASYRLARVAARVFAGKLPKSYLADISINLTRSLCKAGNADDAIEEC
KYLESKGLLDVEGLQLYTLSYWKLGKYDLALSMAKRLASSALPTEHPLAAASLSFICRLV
YHISGQELAIRNILQLPKRAFQSSKVRLVASAMHALDESHQLDSVVSSVHESLSSSKEIA
ALDFLATLGLLVKHGSQDYLEVKKGVNYLRRALHISPNSHLIRTLLGYLLVSSKEWKDVH
ISARCFIVDPSEHQKKEGFKSSVEIFGAGAVACCTVRSGNKTLPMSICRENSKLACKTIK
MLQKCVHQEPWDHHSYYLLVLNYFQQAREEKFPHNLCVVLERLINVSLQSEFYAKEDISS
QYQKFQLLLCAAEVSLQCGNNFECIMHAKSALQMQLSDNYLFFAHLLLCRAYAVENNYVG
LHEEYVRCLEVKTDYHIGWICLKFLESRYKLHSDSSSLALAFQECSKEIKTSWNMWIAIY
NLVQGLTAVWNGEFIGAEESLAQACSLASGESCLFLSHGAICMEIARLQSDSEFLSLAIR
SLKKAKDSSSLPLPFVSLLLAQAEASLGSESKWEKNLIEEWSSWRPEIRPAELFFQMHLL
ARRLKEGSAAISNLEPATSPLRWILQAIHMNPSCLRYWRALLKLFDN
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagaagacgatactgctgctgctataagagggttagaagaagcagttatctcc
gagccgggggatccttgtcttcactttgatctcgggatgttgttatgggacaaggcagca
tcagcaggaggaggaggaggaggagaattgcgagaaaaagccgcacaacattttctcaca
gcagccaagctcaacccacaaaatgctgctgctttcacttatttgggacattactatgct
cgagtatctctcgactctcaaagggctatcaagtgttatcagcgagccctctcccttaat
ccccatgattctattgctggcgaagctatttgtgatttactcgactctactggaaaagag
accttgcagatagctgtatgccgtgaagcttccgacaattcccccagggccttttgggct
ttttccagattgggttaccttctggtcaaccaaaataagtggtccgaagcagcgcagtgc
cttcagcaggccattaggggttatcccacatgtgctgatttgtgggaggccctgggtctt
tcctaccagcaaatgggcatgtttaccgctgctgttaagtcctatggaagagctattgaa
ttggaggaatcaagagtatttgcgctggtggaaagtggaaatgtctatttgatgcttggt
tcgtttcgaaagggaatagagcagtttcggcaagctttacaaatctcaccgatgaatttg
tctgcacatcatgggcttgcctctgcactccttagtttggcaaaggaatctattgattct
ggcgccttcaaattgggagcttcactcttagaggaagcctcgaaagttgcgctagcaagt
acttcgattgttggcaatatatcttgtgcttggaagctgcttggagatattcaggtcaca
tacgcaaaatgttttccatggatggatgaaggaatgggcctaggagctgacgaaaattca
ttcactagtttgatcctgtcatggaagagaatgtgctgtgtagcagtcagatctgcttgt
tgctcctaccaacgggctttgcatttgtccccttggcaagctaatgtgtatactgatgtt
gccattgcatctgagctacttttctcattaagggagaacagtaaagctgacatgaactct
tggtttgtgtctgaaaagatgtgccttggaggcttattacttgaaggttgcaatagcgag
ttttgggtagctttagggtgtttatctgatcattctgcattgaaacaacatgctttcata
cgggcactgcagttggatgtatctcttgcagttgcatgggcacatcttggaaagctttat
aggctggagggggaaagtcaattgtctcagctagcatttgatcgtgcaagaagtattgat
ccttcactttcattgccatgggcaggcatgtcggctgatgcttctgcacggaatatgaaa
ccagatgaggcttatgagtgctgtctgcgggcggttcagatctttccacttgcagaattc
caaacaggtttagttaagcttgctctgcattctggttatctgcaatcaccagaggcattt
ggagccatccagcaggctttgcagcgtgcacctcagtatccggaatctcacaatctgaaa
gggttagtttgtgaagcacggagtgattatgatagtgctgttgcgtcatataggctggca
cgcgttgctgccagagtttttgcaggaaaacttccaaaatcatatcttgcagatatatct
attaatttgaccaggtcactttgtaaggcaggaaatgctgatgatgctattgaagaatgt
aaatatttggaaagcaaaggtcttctggatgtagaaggtttgcagctttatacactttct
tattggaaactgggcaaatatgaccttgctctttcgatggcaaagagactggcctcatct
gctttaccaacagagcatccattggctgctgcctccctcagtttcatctgtagattagta
tatcatatttcagggcaggaattagctattagaaacattttgcaactaccaaaaagagcc
ttccagagttcaaaagttaggcttgtagcatctgctatgcatgcattagatgaaagtcat
cagcttgactcagttgtttcaagtgttcatgagtctctttcttctagcaaagagattgct
gcactggatttcctggccacactgggcttactagtcaaacatggatcccaggactacctc
gaagttaagaagggggtcaattatctaagaagagctcttcatatttctccaaacagtcat
ttgataaggacccttcttggctatctattagtatccagcaaagaatggaaagatgttcac
atttcagctcgatgcttcatagtggatccttctgaacatcagaaaaaggaaggttttaaa
tccagtgttgaaatatttggtgctggagcagttgcttgctgtactgtgaggagcggcaac
aagacattacccatgtccatctgtagagaaaattcgaagttagcgtgcaaaacaatcaag
atgctgcagaagtgtgtccatcaggagccttgggaccatcattcgtattacctgcttgta
ctgaactattttcagcaggcgcgggaggagaaatttccgcataacctgtgtgttgttctt
gagaggttaattaatgtgtctcttcaaagtgagttttatgcaaaggaagacatttcttcc
caataccaaaagttccagcttctgctttgtgctgcagaggttagtttgcaatgtgggaat
aatttcgagtgtattatgcatgcaaaaagtgctctacagatgcagctttcagataactac
cttttctttgcacacttgctactgtgtcgtgcctatgccgtggaaaataattatgttggg
cttcatgaagagtatgtaaggtgcttggaggtcaaaactgattatcatattggttggatt
tgtcttaagtttcttgaaagtcgatacaagctgcactcagattccagttcgttagccttg
gcctttcaagagtgtagcaaagaaataaaaacttcatggaacatgtggattgctatatat
aatttggtccaaggtctaactgcagtttggaacggggaatttattggtgcagaagagtcc
cttgcgcaagcttgctcgttagctagtggcgagagttgcctttttcttagccatggtgct
atttgcatggagattgccaggctgcagtctgattcagaatttttatcacttgctattaga
agtctgaagaaagcaaaagacagttcttcgctaccgctaccctttgtctcactactactg
gcacaagcagaagctagcctcggctctgaatcgaagtgggaaaagaacctcattgaggaa
tggtcatcttggcgaccagagattaggcctgctgaactatttttccagatgcatttgctt
gctagacggctgaaagaaggttctgcagctatctctaatctggagccggctacaagtcct
ctaagatggatacttcaagcaatccacatgaatccgtcttgtttgagatattggagagct
ttgctgaagttgttcgacaactaa
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integrated database retrieval system
