Capsicum annuum (peppers): 107867393
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Entry
107867393 CDS
T04646
Name
(RefSeq) protein ALTERED SEED GERMINATION 2 isoform X1
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cann04121
]
107867393
Ubiquitin system [BR:
cann04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107867393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_SCAP
TRM82_WD
Beta-prop_RIG_2nd
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_WDR41
Beta-prop_VPS8
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
ANAPC3
TPR_19
Motif
Other DBs
NCBI-GeneID:
107867393
NCBI-ProteinID:
XP_016569095
LinkDB
All DBs
Position
4:complement(213526373..213561692)
Genome browser
AA seq
763 aa
AA seq
DB search
MESLCFHDGNITNLINKRYLHVLHDSAHELQMHSSLVKRMALERELEGHQGCVNAIAWNS
NGSLLISGSDDTRMNIWSYSGHKLLHSIETGHSANIFCTKFVPETSDELVVSGAGDAEVR
LFHLSHLKGRGCDDNTVTPSALFQCHTRRVKKLAVEVGNPHVVWSASEDGTVRQHDLREG
ASCPPAGSSRQECHNILLDLRCGAKKSLADPPKQLFALKSCDISSTRPHLLIVGGSDAFA
RLYDRRMLPPLSSSQKKLPPPPCVSYFCPMHLSDRGRSNLHMTHVAFSPNGEEVLLSYSG
EHVYLMDVNPARGSSISYTSGDVSNLMNFSPLINGIELQSSVSGILLNGSSSKRIPAAKL
EKCKRLIQMAVKSLKEDSNFYYGIEACNEVLDSCRDEIGPLLIFECLCTRAAILLKRKWK
NDAHMAIRDCHRARKLNSSSFRPLLLIADALSQLGKHKEALEFAIGTQSLAPSDSEVALK
VESIKEHISAAEADKTNKANGGESRSDPRAGRVLSLSDILYRSDANSDASQDGPRSERDD
SDDDDELELAFETSISGDEGRDVDPNVLHGSLNLRIHRRGDSTGETGRANCPCGSPTSSH
QKEKTAYQPAAVIDMKQRYVGHCNVGTDIKQASFLGERGEYIASGSDDGRWFIWEKRTGR
LIKMLHGDEAVVNCVQCHPYDCIVATSGIDNTIKIWTPTASVPSLVASGAAGPETSNVLD
AMESNQRRLCRTREAVLPFEFLERFRMHEFTEGSLHPFECTQS
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgctttgtttccatgacggcaacatcactaacttgatcaacaaacgttacctc
cacgttctccatgactctgctcacgaattgcaaatgcactcctccttggttaaaagaatg
gctttagaaagagaactagaggggcatcagggttgcgtgaatgcgatagcttggaactca
aatggctcccttttgatatctgggtcggatgatacaagaatgaatatctggagttactct
ggccacaaacttttgcattccattgagactggtcacagtgccaacatattctgcacgaag
tttgttccagaaacttctgatgagcttgttgtttctggagcaggagatgctgaagttcgt
ctttttcatttgtctcatctaaagggaagaggttgtgatgacaatactgtgactccatca
gcactatttcagtgtcatactaggagagtcaaaaaattagctgttgaagttgggaatcct
catgtagtatggagtgctagtgaagatgggactgtgaggcagcatgatttgcgggagggt
gcatcttgtcccccggctggttcttctcgtcaagaatgccataatatacttcttgactta
cgctgtggagctaagaaatcattagctgatcctcctaaacagttgtttgctctgaagtca
tgtgatattagctctacgaggcctcatttgctaattgttggtggaagtgatgcttttgct
cggctgtatgataggagaatgctacctccattatcttcgagtcagaaaaagctgccgcct
ccaccttgtgtcagctacttctgcccaatgcatctttctgatcgtggacgttctaacttg
catatgactcatgtcgcatttagtcccaatggagaagaggttttgcttagctatagtgga
gaacatgtatacttgatggatgtgaatcctgcacgtggaagttctatctcatatacctcc
ggagatgtgtcaaacctgatgaatttttctcccttgatcaacggaatcgaattacaatca
tcagttagtggaatacttttaaatggttcttcatcaaaaagaattccagctgccaagcta
gaaaaatgcaaaagattgattcagatggcagtgaagtctttgaaagaagattccaacttt
tattatgggatagaagcttgtaatgaagttttagacagttgcagggatgagatcggcccg
cttctaatcttcgaatgcttatgcactcgtgcagcaatattgctgaagaggaagtggaaa
aatgatgcacatatggctataagagactgtcatagagctagaaagctcaattcatcctcc
tttaggcctcttcttttgatcgctgatgctctttcacagttgggtaagcacaaagaagca
ttggagtttgctattggcactcaatccttggctccatctgattctgaagttgcattaaag
gtggaaagtataaaagaacatatttctgcagctgaagcagacaaaacaaataaggcaaat
ggcggagaatctagatctgatccacgggcaggaagagtgttatccctaagtgacatactt
tatcgttcagatgcaaacagtgatgcatcacaagatggtcccaggtctgaaagagatgat
tctgatgatgatgatgagttagaattggcttttgaaacatcgatatccggtgatgaagga
cgagatgttgatcctaatgtcctccatggaagtttgaacttgagaatccataggagaggt
gattccactggggagactggacgggcaaattgtccttgtggttcgccaacctctagtcat
caaaaagagaaaacagcttaccagcctgcagcagtgatagatatgaagcaaagatatgtt
ggtcattgcaatgtaggcactgacatcaaacaagcgagctttcttggtgagcgaggtgaa
tatattgctagtggaagtgatgatggcagatggtttatttgggagaaaagaactggtaga
ttgataaaaatgctgcatggagatgaggctgttgtaaattgtgtgcagtgccacccatat
gattgcattgtggctaccagtggaattgataacaccattaagatttggactccgactgct
tctgtcccttcccttgtggccagtggagctgcaggaccagaaacttctaacgtgttagat
gcaatggaaagcaatcaacgcagattgtgccggactcgtgaagctgtcttgcctttcgag
tttttggagcgatttaggatgcatgagtttacagaaggcagtttacatccatttgaatgc
acacaaagctga
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