Capsicum annuum (peppers): 107867710
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Entry
107867710 CDS
T04646
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107867710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107867710
03019 Messenger RNA biogenesis [BR:
cann03019
]
107867710
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107867710
RNA polymerase I system
107867710
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
107867710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW2_Spt5
KOW4_SPT5
KOW6_SPT51-2
KOW7_SPT5
KOW
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
107867710
NCBI-ProteinID:
XP_047266320
LinkDB
All DBs
Position
4:173842671..173866988
Genome browser
AA seq
1036 aa
AA seq
DB search
MPRRDYDDEDDEQEEEEEEVYEEEDLEEEEEEDYDDGGKSGRKRRRSDFIDDAAEEDDDE
DEDDDDDYGGGGRRRPKRRTGSEFFDLEAAVDSDEDEEEEDIEDDFIVDSGADIPDEDGA
RREYRHRLLPHEDQEEDLEELTRSIKQRYARSAHVEYDEEATDVEQQALLPSVRDPKLWM
VKCAIGREREVAVCLMQKAIDRGPELQIRSVVALDHLKNYIYIEADKEAHVREACKGMRN
IYASAKIMLVPIKEMTDVLSVESKAVDLARDTWVRMKMGTYKGDLAKVMDVDNVRQKVVV
KLIPRIDLQALANKLEGREAPKKKAFIPPPRFMNIDEAREMNLRVERRRDPMSGDYFENI
GGMMFKDGFLYKTVSMKSISTLNIQPTFDELEKFRQTGEGGDGDMASLSTLFANRKKGHF
MKGDRVIVVKGDLRNLKGHVEKVEEDTVHIRPNQKDLPLQTLAFSDKELCKYFDLGNHVK
VVSGSSEGATGMVVSVQGHVVNLVSDTTKELLRVFADNVVESSEVTSGLTRIGEYELHDL
VILDNKSFGVIIRVDSEAFQVLKGVPDRPEVALVRLREIKAKVEKKGNAQDRFKNHLAVK
DVVKVVEGPCQGKQGPVEHIFRGVVFIYDRHHLEHAGFICAKTQSCVLVGGSRANGDRNG
NPLSSRFAHMRAPPRAPQSPMRSSRGGPPMNYGGRHRGGRGHDALVGADVKIRLGPFKGC
KGRVVDIKGTSVRVELEAQMKVVTVDRNHISDNVNVSTPFREPSRYGLGSETPSHPSRTP
LHPFMTPMRDPGATPIHDGMRTPMRDRAWNPMSPPRDNWEDGNPASWGSSPQYQPSSPRS
RAYEAPTPGSGWTNTPSGNYSDAGTPRENGSAYANAPSPYLPSTPGGQPPMTPSSAYIPG
TPGGQPMTPGSGGLDMMSPIGGGDTEGPWLLPDILVNVRKSNDDTVTGVVHELLADGSCS
VALGSGGIGDTIIAHPTEIDIVVPKKSDKIKIMGGPQRGATGKLIGVDGTDGIVKVDDTL
DVKILDMVLLAKLAHA
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccgggattacgacgatgaagacgatgaacaagaggaggaagaggaagaggtt
tatgaagaggaggatttagaggaggaggaagaagaagactatgatgatggaggaaagtct
ggacggaaaaggcgtagatcagattttattgatgatgcggcggaggaagatgacgatgag
gacgaagacgatgatgatgattatggcggtggtggtagaagacgccctaaaaggaggact
ggttcggaattctttgacctcgaagctgctgttgatagtgatgaggacgaggaggaagaa
gatatcgaagacgatttcatagtagatagtggagcagatatacctgatgaggatggtgcc
agacgtgaatatcgtcaccggctgttgccgcatgaggaccaagaagaagaccttgaggag
cttacaaggagcattaagcaaagatatgcgaggtcagctcatgtagagtatgatgaggaa
gcaacagatgttgaacagcaagctctcttgccgtctgtcagggacccaaagctctggatg
gtgaaatgtgcgattggccgtgagagagaagttgcggtttgcctaatgcaaaaggcaatt
gatagaggacctgaattgcaaattcgatcagttgtagcccttgatcatcttaagaactat
atatacatagaagcagacaaagaagcccacgtgagggaggcatgcaagggtatgcgtaat
atatatgcctctgctaaaataatgctggttcccataaaagagatgactgatgtcctttca
gttgaaagcaaagctgttgatcttgccagggatacttgggtcagaatgaagatgggaact
tacaagggagaccttgcaaaggttatggatgtagataatgtgagacagaaagtcgtcgta
aaattaattccaaggattgatttacaggctcttgcaaacaagctggaaggaagggaggct
ccaaagaaaaaagcatttattcctccaccacgctttatgaatattgatgaagcaagagag
atgaatctacgtgtggaacgtaggcgagacccaatgtcaggggactattttgagaatatt
ggaggtatgatgttcaaagatgggttcttatataagacggtgtcaatgaaatcaatcagc
accctgaacatacagccaacttttgatgaacttgagaaattccgccaaactggtgagggt
ggggatggcgatatggctagtctatctaccttgttcgcaaataggaaaaaaggtcatttt
atgaagggtgatcgcgttattgtggtgaagggggatctcaggaacttgaaaggccatgtt
gagaaagtggaagaagatactgttcatatcagaccgaatcagaaagaccttcctctgcag
actttggcttttagtgacaaagagctatgcaagtactttgatcttggaaatcacgtgaaa
gtagtatctggttcatcagaaggtgcaactggtatggttgtttctgttcagggacatgtg
gttaacctggtatcagatacaaccaaggagcttctccgtgtatttgccgataatgttgtt
gagagttctgaagtaacatctggtctcactcgtattggggaatatgagctccatgacctt
gtaatactagacaataagagctttggtgtgattattcgtgtagacagcgaagcctttcag
gtccttaagggtgttcctgatagacctgaggtagcacttgttagacttagggagatcaaa
gcgaaagttgaaaagaaagggaatgcccaagatcggtttaagaaccacttagcggtgaaa
gacgtggtaaaagttgttgagggtccttgtcaaggaaaacaaggtcctgtagaacacatc
ttcagaggagttgtttttatttatgatcggcatcaccttgagcatgctggttttatttgt
gccaaaacccaatcttgtgtgttggttggtggctcacgggcaaatggtgatagaaatggt
aaccccttgtcatcgagatttgcgcatatgagagctccaccacgtgctcctcaatctcca
atgagatcgtctagaggtggcccacctatgaactatggaggcagacatagaggtggaaga
gggcatgatgctttagttggagctgatgtgaaaattcgccttggacctttcaaaggttgt
aaagggcgtgttgttgatatcaaaggaacttcagtccgcgttgaacttgaagcccagatg
aaagttgttacagttgatcgcaaccatatctctgataatgttaacgtgtcaacaccattc
agggaaccatctagatatggtctgggaagtgaaacaccatcacatccttcaaggactcca
ctacacccatttatgacacctatgagagatcctggagcaacacctatccatgatggcatg
aggacgccaatgagggacagagcatggaatccaatgagtccacccagggataattgggaa
gatggaaaccctgcttcctgggggtcgagtccgcaatatcagccatctagtccgcgttca
agggcgtatgaagcacctactcctggttctggttggactaatactcctagcggtaattac
agtgatgccgggacgccaagagaaaatggttctgcatatgctaatgctccaagtccttac
ttgccatcaactcctggtggacaaccgccaatgacaccgagttcagcatatatacctggt
actcctggcgggcagccaatgactcctggaagtggtgggctggatatgatgtcaccaata
ggtggtggggatacagaaggtccttggctcttgcctgatatcttggtcaatgtacggaag
tccaatgatgatactgtcactggagttgtccatgagctgctagcggatggttcctgtagc
gttgctcttggatcaggtggcattggtgacactatcattgcacacccaactgaaattgat
atagttgtaccaaagaagtctgataaaatcaagatcatgggtggtccccaacgcggtgca
accggtaagcttattggtgttgatggcactgatgggattgtaaaggttgatgataccctt
gatgttaaaatattagacatggtacttttggctaagttagcgcatgcatag
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