Capsicum annuum (peppers): 107870012
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Entry
107870012 CDS
T04646
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107870012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107870012
Spliceosome [BR:
cann03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107870012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_Vps41
PRP4
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_EIPR1
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
Beta-prop_SPT8
Nbas_N
WD40_like
Motif
Other DBs
NCBI-GeneID:
107870012
NCBI-ProteinID:
XP_016571879
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All DBs
Position
5:501009..509826
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AA seq
580 aa
AA seq
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MDAMDAEDEVPVSTTEPSTQVDDNSTAVNGIGAVTLQPVPPVTSPVGPTGILPPVVPTIA
PRPAVPTPIPPPLAPLPVRPPVIRPPVAQNGEMQASDSDSDLEEMGSGRGAAGSTQEYEI
SEESRLIRERQEKAMQELLMKRRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDR
LRMLMARLDAEGQLEKLMKAHEDEEAAASATPAEEEDIQYPFYTEGSKGLLDARVEIAKY
SLVKSALRLHRARRKRDDPDEDVDAEVDWALRQAGSLALDCSEIGDDRPLFGCSLSHDGK
MLATCSLSGIAKIWKMPQVRKVSTLKGHTERATDVVFSPTSNYLATASADKTARLWNSEG
SHLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLSF
HHDGSLVASCGLDALVRVWDLRTGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRI
WDLRQRKSSYIIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSSRDFKPVKTLSGHEA
KIMSLDVAADGQFITTVSYDRTIKVWSSKNVEKEEKMDID
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggatgctatggatgctgaggatgaagttcctgtttcaactacagaaccttcgactcaa
gttgatgataattcaactgctgttaatggtataggtgcagttactcttcaaccagttcca
cctgtcacttcaccagttggtccgacgggtatccttcctcctgtcgtgcctacaattgct
ccaaggcctgcagttcctacccctattcctcccccattagctccattgccagttcgtcca
cctgtcattaggcctccggttgcacagaatggagaaatgcaagcgagtgattcagattca
gaccttgaagaaatgggatctggtcgtggtgctgcgggctccactcaagaatatgagatc
tctgaggagagtagacttatccgagagaggcaggaaaaggccatgcaggagcttctcatg
aagagacgtgctgctgcactagcagttcctacaaatgatatggcagttcgaactcgactt
cgaaggctcggagaacccataactctatttggagaaagggagatggaaagaagggaccgt
ctgcggatgcttatggcaaggcttgatgcagaagggcagctggaaaagctcatgaaagct
catgaggatgaagaagctgcagcttctgctacaccagcagaggaggaggatattcagtac
cccttttacacagaaggatcaaaaggtcttttagatgctagggtagaaattgccaagtat
tcattagttaagtcagctttacgtctccatcgcgcaaggaggaaaagggatgatccagat
gaagatgtggatgcagaggttgattgggctttaaggcaagcagggagcctggcccttgat
tgcagtgaaattggagacgatcgacccctttttggatgttcgctttcacatgatggaaag
atgcttgcgacctgttctctgagtggaatagcaaagatatggaaaatgcctcaagtgcga
aaggtttccactctaaagggccacactgaacgagctactgatgttgtgttctctccaact
agcaattatttagctactgcatctgctgacaagaccgcaagactatggaactcagaaggt
tctcacctcagaacgtttgagggacatttggaccgtctagctcggattgcttttcatcct
tctggaaagtacttgggcacagctagcttcgacaaaacttggagattatgggatgtggag
actggcgaagagttgcttttgcaagaaggtcacagtaggagtgtttatggtttgtctttt
caccatgacggttcgttagtggcatcatgtgggttggatgctctagttcgagtgtgggat
ttaaggactggacgaagtattcttgctctagaaggccatgttaaaccggttcttggtgtc
agtttttctccgaatggttatcatttggctagtggtggtgaagataatacctgtcgtatt
tgggacttaaggcagagaaaatcttcttacatcataccggctcactccaatcttatctct
caggttaagtttgagcctcaggagggatactttttggctacagcttcctatgatatgacc
gctaaggtatggtcctcgagggatttcaagcctgtaaagactctatctggtcatgaagca
aaaatcatgtcattggatgttgcggcagatggacaattcatcaccaccgtgtcttatgat
cgaacaatcaaggtatggtcaagcaaaaacgttgaaaaggaagaaaaaatggatatcgac
tag
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