Capsicum annuum (peppers): 107870154
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Entry
107870154 CDS
T04646
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107870154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107870154
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107870154
Spliceosome [BR:
cann03041
]
Complex C
Other components
Step II factors
107870154
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_1st
KH_DEAH11_2nd
RRM_DEAH11
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_19
AAA_22
Rcat_RNF216
IBR_1
KH_SLS1_1
ResIII
HA2_C
zf-C3HC4_2
NAT10_TcmA_helicase
nSTAND_NTPase5
AAA_29
Herpes_ori_bp
AAA_30
ABC_tran
TrwB_AAD_bind
SLFN-g3_helicase
Arc_MA
Motif
Other DBs
NCBI-GeneID:
107870154
NCBI-ProteinID:
XP_047268375
LinkDB
All DBs
Position
5:complement(3008772..3018052)
Genome browser
AA seq
1736 aa
AA seq
DB search
MHSPDSSSYNRRFQPPLPSPSFSLSSPSMYHRYSYRQPPCYYDANRPPGNSHKSPNFIIQ
LRFGNRRISRYELDALIGKLPFCPRSSFVFNKGLIFGSLLYDQWSEALEVIVELWKMKLE
SSDYCSFTPFVIRNVEVPSDEEELNGRVKMVFLEKLRKLWVVEKWERKVESLRDEISELS
KLLKNKNSFRVCNELLKKREGIEKDRELIVKRIEEFRRGIQCIIRCLEEESGFEGSGEEE
DLRVIEIGRELDWSKIHCLMMRECRRLDDGLPIFGYREEILKQIHSQQVTVLIGETGSGK
STQLVQFLADCGVTGDRSIVCTQPRKLAANSLAQRVKQESEGCYEDTSIICYPSYSSGHN
FDSKVVFMTDHCLLQHYMADKTLSKTSCIIVDEAHERSLNTDLLLALIKNLLLQRLDLRL
IIMSATADADQLADYFFGCGTLHVAGRTFSVDIEYVPSESTGCLGAGPISSYVYDVVKMV
TEIHKTKGEGTILAFLTSQIEVEWACEKFQVSSAIVLPLHGKLSYEEQHRVFLNYPGKRK
VIFSTNVAETSLTIPGVKYVVDSGMVKESRFEPGTCMSVLRICNVSQSSAKQRAGRAGRT
EPGRCYRLYSESDFEGMPQHQEPEIRKVHLGVAVLKILALGIKNVQDFDFVDAPSPKAIE
MATRNLVQLGAIAKKHDAYELTIEGHQIIKLGIEPRLGKLILSCFNQQLGREGVVLAAVM
ANSNSIFCRVGSEGDKLKSDCLKVQFCHPNGDLFTLLSVYREWEAVPKERKNAWCWDNSI
NAKSMRRCQETVQELEACLQTELNIIIASYWRWDPHVHTEHDETLKSIILSSLAENVAMY
SGYDQLGYEVALSGKYIQLHPSCSLLNFDRRPTWVVFGEILAAANEYLVCVTAFEFNSLS
TLSPSPLFNFLEMDAQKLEKKALTGFGSMLLKRFCGKSNSSVNNLVSRIRTKYMDKRIGI
QVNVDKNEILLYASSNDMESVLDQVNDALEYESKLLQNECLEKCLFSGGSAASASVALFG
AGAIVKHLELKKKFLAVDIFHSNTKAVDDKELLMFLERSTSGDICAVYKSSGTGHDNEEN
RWGRVTFLSPDAAKRAMLLTHVECSGGFLKVVSSNSVSGNDQKQFSSILRARVNWPRRCS
NGVAIVKCELNDVSSMVNDFYGVVIAGNVTRSKPSNRYADSIVISGLNTDLSEPEIIEVL
RGKTDRKILDFFLVRGTAVEDPPVAACEEALRREISPFMPKTTPFVQSIRVQVFQPAPKD
TFMRAAIMFNGSLHLEAAQALEHIDGKVLSGCLPWQKIRCQQQFHSSVSCPAPVYHVIRN
QLDSLLTCLKRRKGVECNLERNENGSYRVKISASATKIVAELRKPLEQLMKGKIVDHVGI
SPTVVQLLYSREGTNILKMVQRETGTYILFDRHSLSVRIFGSPVKIDMAEQRFVNSLLAL
HESKQLEVHLRGGLLPLDLMKRVVQSFGPDLSGLKLKVPDAELSLNTKRHCISIKGTKDM
KQKVEGIISEIAQSSLPSQMMDDDSDCHICLCELEDAYRLERCTHAFCRSCLLEQCESAI
RSREGFPLCCMHRGCGAHILVSDLKSLLSNEKLEELFRASLGAFVAASEGRYRFCPSPDC
PSVYHVAESGEVGAPFVCGACYVETCTSCHLEYHPSISCEKYKEFKDDPDFSLEEWAKEK
DNVKKCPACGFTIEKVDGCNHIECKCGKHVCWVCLVFFISSDDCYNHLRSIHQAII
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgcattcacctgattcctcctcctacaaccgccgatttcagccgccgttgccgtcaccg
tcgttttcgctgtcatcgccgtcgatgtaccaccgttactcttaccgtcaaccgccgtgt
tactacgatgctaatcggccgccgggaaactcacacaagtcgccgaatttcataattcag
ctacgtttcggtaaccggaggattagccggtacgagctagatgctttgattggaaaatta
ccgttttgccctcggagttcgtttgtatttaacaaagggttgatatttggttcgttgttg
tacgatcaatggagtgaagcactcgaagtaattgttgaattatggaagatgaagcttgag
agtagcgattattgttcgtttacgccgtttgttatacggaatgttgaggtaccatctgat
gaagaagagctgaatggaagggtaaaaatggtatttttggagaagttgaggaagttgtgg
gtggttgaaaagtgggagaggaaagtggaaagtttgcgcgatgagattagtgagttgtcg
aaattgttgaagaataagaatagttttagagtgtgtaatgagctgttgaagaaaagggaa
ggtattgagaaggatagggagttgattgtgaagaggatagaggagtttagaaggggaatt
caatgtatcattcgatgtttggaggaggagtcagggtttgagggctcgggggaagaggag
gatttgcgggtaattgagattgggagagagttggattggagtaaaattcattgtttaatg
atgagggagtgtcgaaggcttgatgatggcttgccaatttttggttaccgggaggagata
cttaagcaaatacattctcaacaggtgactgtcttaattggtgagactggatccggaaaa
agtacgcaattggttcaattccttgctgattgtggggtaactggtgatagatctatagtt
tgcacccaacctcggaaacttgctgccaattctttggcacaaagggtgaaacaggaaagt
gaagggtgttacgaagatacctcgattatctgctatccgtcatattcatctggtcataac
tttgattcaaaggtagtatttatgacggatcattgccttttacagcactatatggccgat
aaaactttgtccaagacttcatgcatcattgttgatgaggcacatgaaagaagcctaaac
actgatctacttttagcattgataaaaaatcttctgcttcagaggcttgatctgaggctt
attattatgtctgccacagctgatgcagaccagcttgcggattacttctttggctgcgga
acactccacgtagctggtagaactttttcggttgatattgaatatgttccctctgaatct
actggatgtcttggtgctggcccaatctcctcctatgtctatgatgttgtcaagatggtg
actgaaatccataaaacgaagggagagggaacgattctggcgttcttgacttctcagatt
gaagttgagtgggcgtgtgagaagtttcaagtatcgtcagccattgttttacctttacat
ggcaaactatcctatgaagagcagcatagagtttttctcaactatccggggaagagaaag
gtaatattctctacaaatgttgctgagacatcattgacaattccaggtgttaaatatgtt
gttgattctggcatggtcaaagaaagcaggtttgaacctggcacttgcatgagtgttctc
aggatatgcaatgtcagccagagctcagctaagcagcgggctggccgtgctgggagaact
gaaccaggaagatgttatagactctactcagaaagtgattttgaaggtatgcctcagcat
caggaacctgaaattcgcaaggttcatcttggtgttgcagtgctgaagattcttgctttg
ggcatcaagaatgtgcaagattttgattttgttgatgcaccaagccctaaagctattgag
atggccaccagaaatctggtacaattaggagccattgcgaaaaaacatgatgcttatgaa
ttaactatagaaggacaccaaataatcaagttgggtattgaacctcgcttagggaaattg
atcctcagttgttttaaccaacagttgggtagagaaggtgttgttcttgctgctgtaatg
gctaattccaacagcatcttttgtagggttggctctgaaggagacaagctaaagtctgat
tgcttgaaggtgcaattttgtcatccaaatggtgatctcttcactttactttctgtttac
agggagtgggaggctgtgcctaaggaacggaagaatgcctggtgttgggataatagcatc
aatgccaaatccatgagaagatgccaggagactgtgcaagaactggaagcttgcctccag
acggaacttaatatcattattgcaagctactggcgttgggatcctcatgtgcataccgag
cacgatgaaactttaaaaagtataatactttcttcgcttgcagagaatgttgctatgtat
tctggatatgatcaattaggttatgaggttgcactcagtgggaagtacatccaattacat
ccatcttgttcgctgttaaattttgatcgacgaccaacctgggtagtttttggtgaaatc
cttgctgcagctaatgagtatctggtctgtgttactgcatttgagtttaattctctttct
actcttagtccttccccgttgtttaattttctggagatggatgcccaaaagctggaaaag
aaggctttgacaggtttcggtagcatgctattgaaaagattctgtggaaaatctaacagt
agtgtcaataaccttgtttcacgcattagaactaaatatatggataaaaggattggcatt
caagttaatgttgataagaatgagattttgttatatgcttcatccaatgacatggagagt
gttttggaccaagtgaatgatgcacttgagtatgaaagcaagttgttgcagaacgaatgc
ttggagaaatgcctattcagtggaggatctgctgcatcggcctcagttgccctctttgga
gctggtgcaattgttaagcatttggagcttaagaagaaattcttggctgttgacatattt
cattcaaatacaaaagcagttgatgataaggaactgctgatgtttttggagagaagcaca
tcaggtgatatttgtgctgtgtacaagtcctcaggtactggccacgacaatgaggagaac
agatggggcagggtaacatttctttcccctgatgctgctaaaagagctatgttgttgact
catgtagaatgcagtggtggctttctaaaggttgtttcttctaacagtgtatctggtaat
gatcaaaagcagttctcctccatcctccgagctagagtaaattggcctcgtaggtgcagt
aacggtgtagctattgtaaaatgtgagctaaatgatgtttcttctatggtgaatgatttc
tatggtgtggtgatagctggaaatgttacccgctcaaagccaagcaataggtacgctgac
agcatagtaatatcaggacttaataccgatctttctgagccagagataattgaggttttg
agaggcaaaacagataggaaaattctggattttttcttggtgagaggaactgcggtggaa
gatcctccagttgctgcttgtgaagaagcacttaggagagaaatatcccctttcatgcct
aaaactacaccttttgtccagtctattcgtgttcaggtcttccaaccagcaccaaaggac
actttcatgcgagcggctatcatgtttaatggaagtcttcatcttgaagcagctcaggct
ttggagcatattgatggcaaggttctatctggatgtcttccctggcagaagataagatgt
cagcaacagtttcacagctctgtttcttgtcctgcaccagtctaccacgttattaggaac
cagctggattctttactcacatgccttaaacgaagaaagggtgtggagtgcaatctggag
agaaatgagaacggttcttacagggttaaaatatctgccagtgctacaaagattgtggca
gaattgagaaagccattggagcaactgatgaaaggcaagattgtggatcatgtgggaatt
tctccaactgttgttcaacttctatattccagagaagggactaatatcttgaagatggtt
cagcgggagaccggaacctatattctttttgacaggcatagcctttctgtgagaatcttt
ggctccccggtcaagattgatatggctgagcagaggtttgttaactcccttctggcgcta
catgaaagcaagcaacttgaagtgcatcttcgtggtggacttttgcctcttgaccttatg
aaaagagttgttcagagttttggaccagatcttagtggtctcaaactaaaggtgcccgat
gcagaactctctctgaacaccaagcgtcattgcatctcgatcaaaggtaccaaagacatg
aagcaaaaagttgaggggattatttctgaaattgctcaaagtagtcttccaagtcaaatg
atggacgatgattctgactgccacatttgcttgtgtgaactggaggatgcttatagactt
gaacgttgtacccacgccttctgtcgatcatgcttactggagcagtgcgagtctgcaatc
agaagccgggaagggttccctctatgctgtatgcatagaggttgtggggcacatattcta
gtttctgatttgaagtccctgttgtcaaatgaaaagttggaggaacttttcagggcttct
ttgggtgcatttgtagcagcaagtgagggtcgctaccgtttttgcccctccccagactgc
ccatcagtttatcatgttgctgaatcaggagaagttggtgcaccctttgtctgtggtgca
tgttatgtggagacgtgcacgagttgccacctggagtatcacccctctatctcgtgtgag
aagtacaaggagttcaaagacgacccagatttctctctcgaggaatgggcaaaggagaaa
gacaatgtgaagaaatgtcctgcttgcgggttcacaatagagaaggtggatggctgcaat
catatcgaatgcaagtgtggaaaacatgtttgctgggtttgtttggtattcttcatcagc
agcgacgattgctataaccatttgaggtctattcaccaggccattatatga
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integrated database retrieval system
