Capsicum annuum (peppers): 107870259
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Entry
107870259 CDS
T04646
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107870259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107870259
03041 Spliceosome [BR:
cann03041
]
107870259
03036 Chromosome and associated proteins [BR:
cann03036
]
107870259
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107870259
Spliceosome [BR:
cann03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107870259
Complex B
107870259
Complex C
U2 SnRNP specific factors
107870259
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
107870259
TFTC complex
107870259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
107870259
NCBI-ProteinID:
XP_016572211
UniProt:
A0A1U8GLS9
LinkDB
All DBs
Position
5:7503752..7510217
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQQPTGILSAINGNFSGGKVQELIIARGKTLDLLRPDDNGKLQTLLSVEIFGT
IRSLAQFRLTGAQKDYIVIGSDSGRIVILEYNKEKNCFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYAEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLEHDNDRVNELKIKYFDTIPVTSSLCVLKSGFLFASSEFGNHALYQFQAI
GEDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQVESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLSVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQNGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPVRYTP
RRFVLQPKRKMVIMIESDQGAYTAEEREAAKKECFDAAGNVENGNAEQMENGEDEDGNDP
LSDEQYGYPKSESGRWVSCIRVLDPRTTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFESAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGIGS
VLRLYDLGKKRLLRKCENKLFPNSITTIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQRASLIPGGGECIIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactcttcaacaacccaccggaatactctctgcaatcaacgga
aatttctccggcggcaaagtacaagaactcattatcgcacgtggcaaaaccctagatctc
cttcgacccgatgataatggtaagcttcaaacacttttatccgttgaaatattcggtact
atacgttcactagctcaatttcgattaaccggtgcacaaaaggattacattgtaatcggg
tcggattcgggtcggatcgtaatactggaatataataaggagaaaaattgtttcgataaa
atacatcaagagacatttggtaaatcgggttgtagacggatagtacctggtcagtattta
gcaattgacccgaaagggagagcggttatgattggtgcttgtgagaagcagaaattagtg
tatgttttgaatagggatacgtcggctaggttaacgatttcgtcgccgttagaagcgcat
aagagtcataccattacgttttcaatatgtggtgttgattgtggatttgataacccgata
ttcgctgcgattgagttggattacgcggaggctgatcaggatccgactgggcaagctgcg
aatgaagcgcagaagcatttgacgttttatgagttggatttgggacttaatcatgtttcg
aggaagtggtcagagcaagttgataatggggcgaatttgcttgttactgttccgggaggt
ggtgatggaccgagtggtgtgcttgtttgtgcggagaattttgtgatttataagaatcag
ggacatcctgatgttagggcggttattcctaggagggttgatttgcctgcagaaagggga
gttttgattgtttcggctgctatgcataagcagaaatcaatgtttttctttcttttgcaa
acggaatatggagatatctttaaggtgacgttggaacacgataatgacagggttaatgag
ttaaagatcaagtattttgatacgattccggttacttcttcgttgtgtgtgttgaagtcg
gggttcctatttgcttcgtcagagtttggtaatcatgcgttgtatcagtttcaggcgata
ggagaagacccagatgttgaagcttcatcatcgacgttaatggaaactgaagaagggttt
cagcctgtatttttccagccaagaaagctaaagaatcttgttaggatcgatcaggttgag
agtttgatgccaatcatggacatgaaaatcgtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtcctcggtcttcattgcgcatacttaggcctggttta
gctgttagtgaaatggctgtgtcacagcttcctggtgttccgagtgctgtctggactgtg
aaaaagaatgtcaatgatgagtttgatgcctatattgttgtctcttttgcgaatgcaact
cttgtgctttctattggtgagacagttgaagaagttagtgacagtgggtttctggatact
actccatctctttctgtttcattaattggtgatgattcattaatgcaagttcatcccagt
ggaataaggcatattagggaagatggtcgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatccaatagacttcaagtggtaattgcattaagtggaggggag
ctcatatattttgaagtggatatgactggacagttgatggaagtcgagaagcatgagatg
tcaggtgatgttgcttgtctagatattgctcctgttcctgagggaagacaaaggtctcgt
ttccttgcagttggatcatatgataacactattcgcatcttgtcattggaccctgatgac
tgtatgcaggttctgagcctgcaaagtgtgtcttcaccgcctgagtctctactttttctt
gaagtccaggcctctgttggtggagaggatggtgcagatcaccctgccagcctttttctt
aatgctggtttacaaaatggagttttattcaggactgtggtggatatgataactgggcag
ctttcagatgcacgttcacgtttcttgggtcttagagcccctaagctcttttccattgtt
gtgagaggacggcgtgctatgctatgcttgtcaagtagaccatggcttggttatatacac
caagggcattttcttttgacgcctttatcatatgagacacttgaatttgcagcctcgttt
tcatctgatcaatgtgcagaaggtgtggtagcggttgctggggatgcattgagggtcttc
acaatagagagattgggtgagactttcaatgaaacagctatacctgtaaggtatacacca
agaaggtttgttcttcaacccaaacggaagatggtgataatgattgagagtgatcaggga
gcttacactgcagaagagcgtgaagctgccaaaaaagagtgcttcgatgcagctgggaat
gttgaaaatggaaatgcagaacaaatggagaatggtgaagatgaggatggtaatgatcca
ctatctgatgaacaatatggttatcctaagtcagagtcaggaagatgggtttcctgcatc
agagtccttgatccaaggacaacacaaaccacttgtctgctagagcttcaggataatgag
gctgcctttagcatatgcactgttaatttccatgacaaggagcatggagctctgttagct
gttggtactgccaagggcctccagttttggcccaaaaagtcgtttgaatcagcatacatt
catatatacaagtttaaagaggatgggaaggtcctagagcttttgcacaagacacaggta
gatggtgtgcctcttgcactatgtcagttccaaggaagactactggctggtattgggtcc
gttcttaggttgtatgacttggggaagaaaagactgctccgaaaatgtgagaacaagcta
ttccccaactcaatcacaactatccatacctatcgtgatcggatttatgttggtgacatg
caagagtcattccactactgcaagtatagacgtgatgaaaatcaactgtacatatttgct
gatgacacagttcctagatggctaactgcagcacagcatgtagattttgacactgtcgca
ggagctgataagtttgggaatatctactttgtgagattacctcaggatgtctcagatgag
attgaagaagatcctactggtggaaaaataaaatgggagcaggggaagcttaatggagcc
ccaaacaaggttgaagaaatagtgcaatttcatgttggtgatgtggtgtcttgcttgcaa
agggcatcacttattccaggagggggcgaatgtataatctacgggactgtgatggggagc
gtcggggcaatgcttccatttacctcgagggatgatgttgacttcttctctcatttggag
atgcatttaaggcaggagttcccacctttatgtggcagggatcacatggcctacagatct
gcctacttcccagttaaggatgtgatagatggagacttgtgcgaacagttcccaaccttg
cccatggatatgcagcgcaaaattgcggatgagttggataggacaccaggcgagattctg
aaaaagcttgaagaaataagaaacaaaattatataa
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