Capsicum annuum (peppers): 107870498
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Entry
107870498 CDS
T04646
Name
(RefSeq) DNA repair protein RAD4 isoform X1
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
107870498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
107870498
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
107870498
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
107870498
NCBI-ProteinID:
XP_016572537
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Position
12:4107600..4121394
Genome browser
AA seq
926 aa
AA seq
DB search
MRTRNQAKQQNQSNANEDSLKRYSEMENASDCKDEASETLANISRGAVGKLLKRVNKSRR
SRGLKTDDSYLCKQDTTGKPENVSRDAEKQLTGKQLTGTTVVRTTLDAKCCTRDVLQNVP
SEVENGSTDVLCQNIEREDELDGVDWEDGSVHTLKSESIVKEDTINGVTVEFDAPPDPSP
SKQKTVRRATAEEKELAELVHKVNLLCLLARGRLVDSACNDPLIQAALLSLLPAHLMKLT
DVPKLTAKTLAPLVNWFHSKFRVGSSNDTEKPFHSALASILESQEGTQEEVAALSVALFR
ALNLTTRFVSIMDVASLKPEIEKPYPSGQGPSRAGSEIFNSSTLMVARPRCSPISPAKSM
ADGKHNVSDKTSTSAGQANNGKPRETITGKSNERMSESTSDVQHDINERRKRKGDLEFEM
QLEMALSATAVEISRNTMIADVKDEQSTSSNVSPFKMKKIKAEECSTSSHGISTALGSRK
VGAPLYWAEVYCSGENLTGKWVHVDVVNAIIDVEQNVEAAAAACKLPLRYVVAFAGNGAK
DVTRRYCTKWHKIASERVNSIWWDEVLAPLKDLESVATNGEVHFAQGANRSSLEDMELET
RALTEPLPTNQQAYRSHHLYIIERWLNKNQILYPKGPVLGFCSGHPVYPRSCVQILQRKE
RWLREGLQVKANETPAKVLKRSGKQNKGQDVEDDDCGEGDCGGTVALYGHWQTEPLILAP
AVNGIVPRNERGQVDVWSEKCLPPGTVHLRLPRLVPVAQRLKIDFAPAMVGFEFRNGRSL
PVYEGIVVCTEFKDAILEAYREEEVRREAKERRKTEAEALSRWYQLLASLVTRQRLQNRY
VDGASSQSAVNIATSNDDKSSLPAGGSENTSAHQEKSEIAKSTSPSFVFAENHEHVFLVE
DQTVDEESSTRTKRCRCGFSVQYEEL
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccagaaatcaggcaaaacaacaaaatcaatcaaatgcaaatgaagactctttg
aaacgctatagtgagatggagaacgcaagtgactgcaaagacgaagctagtgaaactctt
gcaaacatatctcgtggtgcagtggggaaacttttgaaacgagtcaacaagtcacgtcgt
tctcggggtctgaaaacagatgatagttacctgtgcaagcaggataccacgggcaagcca
gagaatgtatcgagggatgcagaaaagcagcttactggtaagcagcttactggtactaca
gttgtaaggactacattagatgctaaatgctgcactagagatgtgttacaaaacgtgcca
tcggaagtggaaaatggaagtacagatgttctgtgtcagaatattgagagggaagatgaa
cttgatggtgttgattgggaagatgggtcagttcatactttgaagtctgaaagcattgtt
aaggaagatacaatcaatggtgtgactgttgagtttgatgccccgcctgatcctagtcct
agtaaacagaagacagtacgccgagcaactgctgaagaaaaggaattggctgagcttgtg
cataaggttaacttactttgtttactagcaaggggcaggctggtagatagcgcttgcaat
gatcctcttatccaggctgctttactttcactgctgcctgcacatctgatgaagttgacc
gatgttccaaaacttactgcaaagactctagctcctcttgtcaattggttccacagtaaa
tttcgtgttggaagttcaaatgatacggagaagccatttcattcagctttggcatcaatt
cttgagtctcaggaaggaacccaagaagaggttgctgcattatctgtcgcgctgtttagg
gctttgaatcttacgaccaggtttgtatcaatcatggatgttgcttccttgaagcctgaa
attgagaaaccatatccctctggtcaaggccctagtagggctggtagcgagatatttaac
tcttcaacattgatggtggctagaccaaggtgttctcctatctctcctgctaaatctatg
gctgatggcaaacataatgtttctgataagacttcaacatctgctggccaagctaacaat
ggcaagcctagagaaactattacaggtaaatctaatgaaagaatgtcggagtcaacatcg
gatgttcagcatgatattaatgagaggcgaaagagaaaaggggatcttgaatttgagatg
cagctggaaatggctctttctgccactgcagttgaaatttctaggaacactatgatcgca
gatgtgaaggatgaacaaagtacttcatcaaatgtatcaccgttcaaaatgaagaaaatt
aaagcagaagagtgttcaacatcctctcatggaatatcaactgctcttggatctaggaaa
gtaggtgcacctctatactgggcagaggtctactgcagtggtgagaacctgactgggaaa
tgggtgcatgttgatgttgtaaatgcaattattgatgtagagcaaaatgtggaagctgca
gctgctgcatgcaagttgcctttaagatatgttgttgcttttgctggaaatggagctaaa
gatgtgacacgcaggtactgtacaaagtggcacaagatagcatctgaacgagtcaactca
atttggtgggatgaagtattggcaccgttaaaggatttggagtcagttgccaccaatggt
gaagttcattttgcacaaggagcaaacaggagctctctcgaagatatggagttggaaact
agggcactgactgaacctcttcccacaaatcaacaggcttacagaagtcatcacctatac
ataatcgaaagatggcttaacaaaaatcagatactctaccccaaaggacctgtattaggt
ttttgttctggtcatccagtatacccacgatcctgtgtacaaatactccaaagaaaggaa
agatggcttcgcgaggggctccaagtgaaagctaacgagacaccagcaaaggttctgaaa
cgttctggaaagcagaacaaaggacaggatgttgaagatgatgattgtggcgagggggat
tgtggaggaactgtcgccctctatggacattggcaaactgaaccactgattcttgcacct
gcagtaaatggcattgtacctaggaatgagcgtggtcaagtggatgtctggtccgagaag
tgccttccacccggtacagtccacttgagattgccaaggttggttcctgttgctcaaagg
ctgaaaatagattttgcacctgctatggttggatttgaattccggaatggtcgatctcta
cctgtttatgaggggattgtggtgtgtaccgagttcaaggatgcaattctagaggcatat
agagaagaagaggtgagaagagaggccaaagagaggaggaagactgaagcagaagctctt
tccaggtggtatcagcttcttgcatcgcttgttacccgacagagactgcaaaatcgctac
gtagatggggcatcttcacaatcagcggtcaatattgcaacatccaacgatgataaatcc
tccttaccagccggtggcagtgagaacacgagcgctcatcaagaaaaatccgagattgcc
aaatcgactagtccatcatttgtatttgctgaaaaccatgaacatgtattcctagtagaa
gatcagactgttgatgaagaaagttcaacaaggacaaaacgatgtcgttgtggcttttca
gttcaatatgaggagttatag
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