Capsicum annuum (peppers): 107870656
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Entry
107870656 CDS
T04646
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107870656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107870656
03012 Translation factors [BR:
cann03012
]
107870656
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107870656
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107870656
Translation factors [BR:
cann03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107870656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
Dicer_dimer
T2SSE
PhoH
DUF6877
TFIIA
Motif
Other DBs
NCBI-GeneID:
107870656
NCBI-ProteinID:
XP_016572734
LinkDB
All DBs
Position
5:complement(53946897..54004759)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLYTLQLLFTYRNLKPLNITPPPLPSLAMKDRPPLSCGGAVYVPPHQRLRSLITVPSTA
SIDHQKPNSNNTVKSSYPYLAPPQQQQQQQQQAVRLQHKRSPQFDEISELTPYQGAATSD
NAEAWKWKLTALLHNNDKQEVLSREKKDRRDYEQISALASKMGLYSNLYSKVVVVSKLPL
PNYRFDLDYKRPQREVILPPGLPRRVDVFLGEYLSRKPRSTDVLSRSSSNGSIATDEGLF
EQSEALPQSKGSMKILWQRSKQMQTEQQTWQESPEGRKMLEFRSSLPAYKGKDTILSAIS
KNQVVIVSGETGCGKTTQIPQFILESEIESVRGALCSIICTQPRRISVMAVSERVAAERG
ELLGETVGYKVRLEGVKGRDTQLLFCTTGILLRRLLVDRNLKGITHVIVDEIHERGMNED
FLLIVLKDLLPRRPELRLILMSATLDAELFSSYFDGAPLVHIPGFTYPVRTHFLENILEM
SGYRLTPDNQIDDYGQERVWKMNKQAPRKRKSQIASAVEDTLRAADFQEFSPETQESLSC
WNPDCIGFNFIEYILCHICENERPGAVLVFMTGWDDISSLKDKLQCHPILGNTTRVLLLA
CHGSMASTEQRLIFDKPEDGVRKIVLTTNIAETSITIDDVVFVIDCGKAKETSYDALNNT
PRLLPSWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADFQLPEILRTPLQSLCLQI
KSLKLGSISEFLSRALQSPELLAVQNAIEYLKIIGALDESENLTVLGRYLTMLPMEPKLG
KMLILGAILNCLDPILTIVSGLSVRDPFLSPLDKKDLAEAAKAHFSRDFSDHLALVRAYE
GWRDAERDLAGYEYCWKNFLSAQSMKAVDSLRKEFYSLLNDTGLVDSNITMYNSWSYDEH
LLRAIICYGLYPGICSVLHNEKSFSLKTMEDGQVFLHSNSVNARDSRIPYPWLVFNEKIK
VNSVFLRDSTAISDSVLLLFGGTITKAEADGHLKMLGGYLEFFMDPTIAEMYRSLRRELD
ELIHTKLLNPRMDVHGYHELLSAIRLLISEDQCGGRFIFNHQILLPSKPCAGAPPPATMS
RIESGPGGDNAKSQLQTLLNRAGYATPTYKSLQLNNNQFQATVEFNGMQIMGRPCNNKKQ
AEKDAAAEALDWLLEGHCAGPDYIEQMSQFLKKSKKA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctatatactctccaattattattcacatacagaaaccttaaacccttgaacatt
acaccaccgccgcttccgtcgttggcgatgaaggaccggccgccgttatcatgcggcggc
gccgtttacgtacctccacatcaacggctccgttctctaatcactgttccctctactgct
tcaatcgatcatcaaaagcctaattcgaacaatactgtcaagtcgtcctacccttacttg
gcgccgcctcagcagcagcagcaacaacaacaacaagcagtacgattgcaacataagaga
agtccacaatttgatgagatttctgagcttacgccatatcagggtgctgccacatctgat
aacgctgaagcatggaaatggaagctcactgctttgttacacaacaatgataaacaagag
gtgctctcaagggagaaaaaggataggcgtgattatgagcaaatatcagctttagcaagc
aaaatgggtttatatagcaacttatattcaaaagtagttgttgtcagcaagcttccgtta
cctaactacaggtttgatttggattataagcgtcctcagagagaggtgatcctgcctccg
ggtttacccagacgagtagatgtttttcttggagaatatttgtctcgtaagccaaggagc
acggatgtactttcacgatcaagcagtaatggcagtatagctactgatgagggtctattt
gagcagtcagaggcacttcctcaaagtaagggttctatgaagatcctttggcaaaggagt
aaacaaatgcaaacagagcagcaaacttggcaggaatcacctgagggtaggaagatgcta
gaatttcgtagtagtctacctgcgtataagggaaaagacacaatattaagtgccatttca
aagaaccaggtggttattgtctctggtgaaactggctgtgggaagaccacacagattcca
caatttattttagagtctgaaattgagtctgttcgtggagccttgtgcagtatcatatgt
acacagccaagaagaatatctgttatggcagtatctgaaagagttgctgcggagagaggg
gagttgttgggtgaaacagttggatataaagttaggctagaaggtgttaaaggaagggac
actcaactcctcttctgtaccactggtatcttgttaagaagactgctagttgatagaaat
ctgaagggaatcacacatgtaattgtggatgagattcatgagcgtggaatgaatgaagac
tttctgctaatagttctaaaggatttactcccacgccggccagaattaaggttgattttg
atgagtgccaccttagatgcagagcttttctcgtcatactttgatggggctccactagtc
cacattccgggatttacatatccagttcgtactcatttcctggaaaatattctggagatg
tcggggtacaggttgacgccggacaatcagattgatgattatggtcaggagagagtgtgg
aaaatgaacaagcaagctccaagaaaaaggaagagccagattgcttctgctgtcgaggac
actctcagagctgctgatttccaagaatttagccctgagacacaagagtctttgtcttgt
tggaatcctgattgtataggcttcaattttatagaatatattctatgccatatttgtgag
aatgaaaggcctggtgctgttttagtttttatgactggttgggacgacataagttctttg
aaggataagctacaatgtcatcccatcttggggaatacgacccgtgttttattattggca
tgccatggttctatggcaagtacagagcagaggttaatctttgacaagcctgaagatggg
gtgaggaagattgtgttgactacaaatattgctgagaccagtatcacaatcgatgatgta
gtttttgttattgactgtggcaaggcaaaagagacatcatatgatgcacttaataatact
cctcgtttgcttccttcttggatttcaaaggtttcagctcgacaaagaaggggacgagcc
ggacgtgttcagcctggagaatgctatcatctttatcccagatgtgtatatgatgctttt
gcagattttcaattaccggaaatcctgaggactcctttgcaatccctttgtttgcaaatt
aaaagtttgaaacttggtagtatttctgagttcctctcaagggctttgcaatctcctgag
ttattagcggttcaaaatgctattgagtatctgaaaatcattggagctttagatgagagt
gaaaatttgactgttttagggcgttacttaacaatgcttccaatggagcctaaactcggg
aaaatgcttatactgggggcaattttgaattgtttggacccgatattaactattgtttct
ggtcttagtgtccgagatcccttcttgtcaccacttgacaagaaagatcttgcagaggct
gctaaggctcatttttcacgtgattttagtgatcatcttgctcttgtccgagcatatgag
gggtggagggatgctgaaagagacctagctggatatgaatactgctggaagaattttctg
tctgcacagtctatgaaagctgttgattctcttcgcaaggagttctactctttgctgaat
gatactgggcttgttgacagcaacattaccatgtataattcttggagttatgatgagcat
ctccttcgagcgattatctgctatgggttgtatcctggaatctgttctgtactgcataat
gaaaagtcattttcattgaaaacaatggaagatggtcaggtgtttttacactcgaactct
gttaatgcccgggactccaggataccatacccttggctggttttcaatgaaaagatcaaa
gtaaactctgtctttctccgggattctacggctatctccgactcagtgctgcttctattt
ggaggaaccatcacaaaagcggaagcggacggtcacttgaaaatgttgggtggatactta
gagttctttatggaccctaccatagcagaaatgtacagaagtctaagaagagagcttgac
gagttaattcacactaaactcttgaatcctaggatggatgtacacggttatcatgaactt
ctttcagcaatacggttgcttatctcagaggatcaatgcggtggcagattcatttttaac
catcagattttacttccttccaagccatgcgctggagcaccaccaccagctacaatgtca
aggatagaaagtggtccgggaggtgacaatgccaagtctcagctacagacgttgcttaat
cgagcaggatatgcaacgccaacctacaagtcattgcaacttaataacaatcagtttcaa
gctactgtggagttcaatggaatgcagataatgggacgaccttgcaacaacaaaaagcaa
gctgaaaaagatgcagcagctgaggctctggactggttgttggaagggcactgtgcaggt
cctgattacattgagcagatgtctcaatttcttaaaaagagcaaaaaagcatag
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