Capsicum annuum (peppers): 107871287
Help
Entry
107871287 CDS
T04646
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03440
Homologous recombination
cann03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107871287
03450 Non-homologous end-joining
107871287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cann03032
]
107871287
03400 DNA repair and recombination proteins [BR:
cann03400
]
107871287
DNA replication proteins [BR:
cann03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107871287
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107871287
BRCA1-C complex
107871287
NHEJ (non-homologous end-joining)
MRX complex
107871287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SMC_N
Rad50_zn_hook
SbcC_Walker_B
AAA_29
AAA_13
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
107871287
NCBI-ProteinID:
XP_047268682
LinkDB
All DBs
Position
5:complement(214101890..214136456)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKVACTGEMPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQSQEIKTYKLKLENLQTLKDAAYKLRESIAQDKEKTEALKN
QMEELEKEIQTLDSKIHHTEATLKDLLKLQGEIATKNAERNTLVKEKEKQYAALAEENED
TDEELREWKTKFDERIALLESKISKLEREMNDTEAKSSFLKESVTNYIVEISKLQADAEA
HAELKNERDFTLRKLFDRHNLGAVPNGSLSDDVASNLTNRIKQRLTHLDKDLQDKKKSNE
AEIASAWHQYEIANREWSEKEAQKQAKADIKNGILKRIKEKEDERDVLECQISDINVAHL
DEREKKMQIESERKSKQLAEREFDLNIRQKQTEMYTIDQQLKNLRDEKDHMAAESEDRIK
LSLKKAELENLEKNYKKIMNDNKDKIKAVLKGRLPSDKHLKNEITQAQRALQREVDDLSV
KAREAEKEVNMLQMKIEEVNHNMTKYHKDMDSRKRFLESKLQLLDQEFAGIESYPKIMDS
VKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQRVKAAS
SAEHIKVLAMESSNADSRFQQIDKLRLVYEEYVKLGKESIPQAEKNLNELNEELEQKNQA
LDDVLGVLAQIKAEKDAVDVLIQPVETSDRLFQDIQARQKQVDDLEYGLDSRGQGVRSME
EIQSELGELQSKKDNLYTDVEKLRNDQRYMENEYASFQLRWANVREEKSRVANILDQMKR
IEEELDRIVEEKNQIGLEEKHLAEAFGPLLKEKDKRLRDHEDLKTKLGEQWEEQAEIKRN
YQQEVDTLLKITSKIKEYYDLKKEQRLNELQDKRRLSESQLQSCESRKHEITAEVKKSKE
LMGNQDGLRRNIEDNLNYRKTKAEVDKLTHEIELLEDEVLTLGGFSTVEAELKKLSLERE
RLLSELNKYHGTVSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
SALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQYIGQRQHAEKYYRITKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagtagataagatgctgataaagggaatccggagctttgacccggagaacaaa
aatgttatcacttttttcagacctttaactctcatcgttggtcctaacggcgctggaaaa
acaactataattgagtgcttgaaggtagcctgcactggtgagatgccgccaaatgctcgc
tctggtcatagctttatccatgaccctaaggtggctggagagacggagacaaagggtcag
ataaagctacggttcaagacagcagcagggaaagatgtggtgtgcattaggtcttttcag
ctaactcagaaggcaacaaagatggaatacaaggccattgagagtgttctacaaactata
aaccctcacactggagagaaagtttgcctaagttatagatgtgccgatatggaccgagaa
atccctgctctcatgggtgtctcaaaggccattcttgaaaatgtgatatttgttcaccaa
gatgaggcaaactggccattgcaagatccatctacgctgaaaaagaagttcgatgatatc
ttctctgctactagatacacaaaggcattggaggttatcaaaaagcttcacaaggatcaa
tctcaagaaataaagacatataagttgaaattggagaatcttcagactttgaaagatgct
gcttacaagttgagggaaagcattgcccaagacaaggagaaaacagaggcactgaaaaat
cagatggaggagcttgaaaaagagattcagactctagatagtaagatccaccatactgaa
gcaacgttaaaggacctccttaaattgcagggagagatagccaccaaaaatgctgaaagg
aacaccttagtcaaagaaaaggaaaagcagtatgcagcacttgcagaagagaatgaagac
actgatgaagagctgagggaatggaagacaaagtttgatgaaaggatagcacttctggaa
tcaaagattagcaagttggagagggaaatgaatgacacagaggcaaagagttccttcctt
aaggagtccgtgacaaactatatcgtggagatcagcaagcttcaagctgatgctgaagct
catgcggagttaaaaaatgaaagagacttcactctcaggaagctttttgacagacacaac
ttaggggctgttccaaatgggtcactcagtgatgatgttgcttcaaatttaacaaatcgt
ataaaacaacgattaacacatcttgataaggatttacaagataaaaagaaatcaaatgag
gcagaaattgcatctgcatggcatcaatacgagattgcaaatcgcgaatggagcgaaaag
gaggcgcaaaaacaggctaaagcagatattaagaacggcattttaaagcgcattaaagag
aaagaggatgaacgtgatgtgcttgaatgtcagatttctgatattaacgtggctcatctt
gatgagagggaaaagaaaatgcaaattgaatctgagagaaagtctaagcagcttgcagaa
agagaatttgacttaaacataaggcaaaagcagactgagatgtacaccatagaccaacaa
ctgaagaatctccgtgatgaaaaagatcatatggccgctgagtctgaggacagaattaag
ctctctcttaagaaggcagagttggaaaatctcgagaagaattataaaaagataatgaat
gataataaggataagataaaagcagtgttgaaaggaaggcttccatctgacaaacacttg
aagaacgaaattactcaggcacagagggctctgcagagagaggttgatgacttgagtgtc
aaagcccgggaagctgagaaggaggtcaatatgttgcagatgaaaatagaggaagttaat
cataacatgaccaaatatcacaaggacatggactcaagaaagagatttctggaatcaaag
ctccagttgctggaccaggaatttgctggtatagagtcctatcccaaaattatggactca
gtcaaagagaaaagggatgtccagaaaagcaagttcaacatcgccgatggtatgcggcaa
atgtttgatccatttgaaagagttgcccgtgctcatcatatttgcccttgctgtgagcgt
cctttctctgctgaagaggaggatgaatttgttaagaagcaacgagtaaaagcagcaagc
tctgctgagcacattaaagtattggctatggagtcttcaaatgctgattctcgtttccaa
caaattgacaagcttcgtttggtttatgaagagtatgtcaaacttggaaaagagtcaata
cctcaagcagagaagaatttaaatgagctaaatgaagaattggaacaaaaaaatcaggct
cttgatgatgtattaggtgtcttggctcagataaaggctgagaaggatgcagttgatgtg
ctaatacaacctgtagaaacatctgataggcttttccaagacattcaagctcggcagaag
caggttgatgatttggaatatggccttgatagccgtgggcaaggcgtaagatctatggaa
gaaattcaatcagaactgggtgaactgcagagcaaaaaagacaatttgtatacggacgtg
gagaagctgagaaatgaccagagatatatggaaaatgaatatgcaagtttccaattaaga
tgggctaatgtaagggaggagaagtcacgagtagcaaacatattggaccaaatgaaaagg
attgaagaggaattggatcgcattgtggaggagaaaaatcaaattgggcttgaagagaag
catcttgcagaggcttttggtcccttattgaaggaaaaagacaaacgcttaagggaccat
gaggatctgaaaacaaaacttggtgaacagtgggaagagcaggcagaaattaaaagaaat
tatcaacaggaagttgatacacttttgaagattacctctaaaattaaagagtattatgat
ttgaagaaagaacaaagattgaatgaactgcaggacaagcgaagactgtcagaatcccaa
cttcaaagttgcgagtccaggaagcatgagataacagctgaagtgaaaaaaagtaaggag
ttgatggggaaccaggatggcttgagacgcaacattgaggataacttgaactatcggaaa
actaaggctgaagttgataagcttacccatgagattgaattactggaagatgaagtgttg
acgttgggtggcttttccactgttgaagctgagcttaaaaagctttcactcgaaagagag
aggctactttctgagttaaacaagtaccatggcactgtatctgtttatcaaagcaatatc
tccaagaacaaagtcgatcttaagcaggcacaatacaaggatattgacaaacgctatttt
gatcagctaatccagcttaagactacggagatggcaaacaaggatttggacagatattac
agtgcccttgacaaagcactgatgcgttttcacacaatgaaaatggaagagataaataag
attatcagggaactgtggcaacaaacatacaggggccaggacatagactacataagcatt
cattcagattctgaaggatctggtactcgatcttatagctataaggttttgatgcaaact
ggtgatactgagctagaaatgcgagggaggtgtagtgctggccaaaaggtccttgcatca
ctcatcatacggttggcattggctgaaacgttttgtctcaactgcggaattcttgcactg
gatgaacctaccacaaacctagatggccccaacagtgagagtcttgctgcagctctgtta
agaattatggaggacaggaaaggccaagagaactttcaactaattgtcattacacacgat
gagcgatttgctcaatatattggtcaacgccagcatgcagaaaagtattatcgcatcaca
aaagacgaccatcaacacagcataattgaagctcaggaaatatttgattga
DBGET
integrated database retrieval system
