Capsicum annuum (peppers): 107872836
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Entry
107872836 CDS
T04646
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107872836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107872836
03036 Chromosome and associated proteins [BR:
cann03036
]
107872836
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107872836
Coactivators
SAGA/TFTC/STAGA complex
107872836
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107872836
STAGA complex
107872836
TFTC complex
107872836
SAGA complex
107872836
SLIK complex
107872836
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
DSE1_N
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_SCAP
ASA1
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_NOL10_N
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
PAC11
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SPT8
Tricorn_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_IP5PC_F
LisH_PAC1
PALB2_WD40
SHKBP1_KCTD3_C
FadA
LisH
Cytochrom_D1
Beta-prop_ACSF4
PROPPIN
LisH_SSDP
Motif
Other DBs
NCBI-GeneID:
107872836
NCBI-ProteinID:
XP_047269580
LinkDB
All DBs
Position
6
Genome browser
AA seq
672 aa
AA seq
DB search
MDEDEIEKAVVAYLKKKGFKQTELAFQEEQQLNNNNNNNNSANSQIDPDITKKILSFSEF
ETGPERYQEEYSKLRSWAYSSLDLYKHELLRVLYPVFIHCFMELVAKGHLQEARAFFNSY
REDHEMTHLRDLQKLEGVLSPSHLEEMEFAHSIRMSKVNIKMCQYSYDLLLQYLHKSESI
TMLGIINERINFQVSPGQPGSISDDAEVVTLVASGHDASLINQKEVHWGLLEDSLEERIE
KTGGSVPDAEKFDGDPKEGEVEENKKKSVEGGKQGAPLKKLKKDKVGVATGKSSRTESST
VTTAPRVKPELALPAIPAEVELSILEDLRNRVQLSNASLPSVSFYTFVNTHNGLNCASIS
HDGSLVAGGFSDSSLKVWDMAKLGQQTGPSILQGETDSSSNEHGLGSNGGKRCYTLLQGH
SGPVYSASFSPYGDFLLSSSSDSTIRLWSTRLNANLVCYKGHNYPVWDVQFSPAGHYFAS
SSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGDCV
RIFIGHRGMILSLAMSSDGRYMASGDEDGTVMMWDLSSGRCITPLVGHSSCVWSLAFSGE
GSLLASGSADCTVKLWDVTTSTKAPLKEENKSGSNNRLRSLKTLPTKATPVYALRFSRRN
LLFAAGAFSKSA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgaaattgagaaagcagtagtagcctatttgaagaaaaagggattcaaa
caaacggagctcgcttttcaagaagaacaacaactgaacaataacaacaacaacaacaac
tccgctaattcccaaattgaccccgacattaccaaaaaaatcctttctttttctgaattt
gaaactggtcccgaacgataccaagaagaatacagcaagcttcggtcatgggcttatagt
tcactggatttatataagcatgagttgcttcgtgtgttatatcctgtatttattcattgt
ttcatggaacttgtcgctaagggtcatcttcaagaagcacgagcctttttcaatagttac
cgtgaagaccatgagatgacgcatttgcgtgatcttcagaagttagaaggcgtcctctca
ccatcccatctagaggaaatggaatttgctcattctatacggatgagcaaagtgaacata
aagatgtgtcagtactcctatgaccttttgttgcaatacttgcacaagtcagagtctatt
acaatgcttgggatcatcaatgagcggattaattttcaagtttctcctggacagcctggc
tctatatctgatgacgcggaagttgtaactcttgttgcaagtggccatgatgctagtctc
ataaatcagaaagaagttcattgggggctgcttgaagattctttagaagaacggatagaa
aagacaggaggttcagttccagatgcggaaaagtttgacggagatcccaaggaaggagag
gtggaagaaaacaagaagaagtcagttgaaggtggaaaacaaggtgcacctcttaaaaag
ctaaagaaggacaaagttggggttgcaacagggaaatcttctcgtacagagagcagcacc
gtcacaactgcaccacgtgtcaaaccagaacttgctttacctgctatacctgcagaggta
gaactttctattctggaagacttaaggaaccgtgtacagttgagtaatgcatcattgccc
tctgttagcttctatacatttgttaatacacataatggactaaactgtgcatcaatatca
catgatggatcattagtggctggtggcttctcagactcatctctgaaggtttgggacatg
gcgaagcttgggcaacaaactggtccatctattttgcagggggagactgattcatcttca
aatgagcatgggcttggctcaaatggaggaaaaagatgttatacattattgcagggccat
tcagggcctgtttattctgcgtcctttagtccgtatggggattttcttctgtcttcatca
tcagattcaacaattcggttatggagcactaggttaaatgctaatcttgtttgctacaaa
ggccacaattacccagtatgggatgttcagtttagtccagctggacattattttgccagt
tcttcacatgaccgtactgcaaggatctggtctatggacaggatacagcctctgagaata
atggccggacacttatccgacgtagattgtgtgcaatggcatgcaaattgcaattacatt
gcaactggatcaagcgacaaaactgtacgcttgtgggacgttcagagtggcgactgcgtc
aggattttcattggtcataggggtatgatcctttcattggcgatgtcttctgatggtcga
tatatggcatcaggagatgaagatggaacagtcatgatgtgggatctctcaagtgggcgt
tgtattactcctttagtcggtcactcttcctgtgtgtggtcacttgcttttagtggtgaa
ggttcacttcttgcatctgggtctgctgattgcactgtaaaattatgggatgtaaccaca
agcacaaaagcaccactaaaagaagagaacaaatctggaagtaacaacagacttcggtcg
ttgaagaccctgcctaccaaagctactccagtctatgctttgcgcttttctagaagaaat
cttctatttgctgctggagctttctcgaaaagtgcatga
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