Capsicum annuum (peppers): 107872847
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Entry
107872847 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03013
Nucleocytoplasmic transport
cann03015
mRNA surveillance pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107872847
09122 Translation
03013 Nucleocytoplasmic transport
107872847
03015 mRNA surveillance pathway
107872847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107872847
03041 Spliceosome [BR:
cann03041
]
107872847
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107872847
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107872847
Spliceosome [BR:
cann03041
]
Complex C
Other components
EJC/TREX
107872847
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107872847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107872847
NCBI-ProteinID:
XP_016574966
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All DBs
Position
6:complement(188498947..188506912)
Genome browser
AA seq
428 aa
AA seq
DB search
MGDTKENEAYEEELLDYEEDDDKAPDSVNGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLS
LARDKDLSLRNVRHFILDECDKMLESLDMRRDVQAIFKMTPHDKQVMMFSATLSKQIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSEVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagatacaaaggagaacgaagcttacgaggaagagctactcgattatgaagaagat
gatgacaaggcgcctgattccgttaatggaaaagttaacggcgaatcggctaagaagggt
tatgttggaattcacagttccggattcagagactttcttttaaagccagagctactgagg
gctattgtggattcagggtttgagcatccctctgaagtgcaacatgagtgcattccacaa
gctattctgggtatggatgttatttgtcaagctaaatctggaatgggcaaaacggctgtt
tttgtcctttcgaccctgcagcagattgaacctgttgctggtcaggttgctgccttggtc
ctatgccatacaagggaattagcttatcagatctgtcatgaatttgagaggtttagcaca
tatttgcctgatatcaaggttgctgttttctatggcggtgtcaatatcaaacttcacaag
gagcttctgaagaatgaatgccctcatattgttgttggaactcctgggagagtactctca
ttggctagagataaggacctatctctgaggaatgtgaggcattttattctggatgaatgt
gacaagatgcttgagtcgcttgacatgaggagagacgtgcaggcaattttcaagatgact
ccccacgacaagcaagtgatgatgttttcagcaacactcagcaagcagatccgcccagtc
tgcaaaaagtttatgcaagatccgatggaaatttatgttgatgatgaagcaaagttgacc
cttcatggccttgtacagcattacatcaaattgagtgaaactgagaaaaaccgaaagtta
aatgatctgctggatgccttggacttcaaccaagtagttatatttgtcaagagcgtgaat
agggcagcagagctgaataaattactagtggagtgtaattttccatctatctgcatccac
tctggcatgactcaggaagaaagactgactcgctacaaaggtttcaaggagggtcataag
aggattctcgtggcaactgatttggttggtaggggcattgacattgaaagggtcaacatt
gttattaactatgacatgccagattctgcagacacttatcttcacagagtgggtagagct
ggtaggtttggaaccaaaggccttgccattacattcgtatcatcagcatcagattctgaa
gttcttaatcaggtccaggaaaggtttgaagtagacataaaagagcttcctgagcagatt
gatacttccacatacatgccatcttag
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