Capsicum annuum (peppers): 107873010
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Entry
107873010 CDS
T04646
Name
(RefSeq) replication factor C subunit 3 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03030
DNA replication
cann03410
Base excision repair
cann03420
Nucleotide excision repair
cann03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107873010
03410 Base excision repair
107873010
03420 Nucleotide excision repair
107873010
03430 Mismatch repair
107873010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cann03032
]
107873010
03036 Chromosome and associated proteins [BR:
cann03036
]
107873010
03400 DNA repair and recombination proteins [BR:
cann03400
]
107873010
DNA replication proteins [BR:
cann03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
107873010
DNA Replication Termination Factors
ELG1-RFC complex
107873010
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
107873010
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
107873010
Check point factors
HRAD17(Rad24)-RFC complex
107873010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_16
AAA_22
AAA_assoc_2
AAA_11
AAA_5
DUF815
AAA_14
ATPase_2
AAA_30
AAA_24
RuvB_N
DNAX_ATPase_lid
AAA_7
ResIII
AAA_3
AAA_19
AAA_18
nSTAND3
AAA_28
bpMoxR
AAA_2
IstB_IS21
AAA_25
RNA_helicase
ABC_tran
SLFN-g3_helicase
TniB
Mg_chelatase
DO-GTPase1
Motif
Other DBs
NCBI-GeneID:
107873010
NCBI-ProteinID:
XP_016575184
LinkDB
All DBs
Position
6:171306213..171312788
Genome browser
AA seq
360 aa
AA seq
DB search
MAETISLMDIDDDKIHTKPNKGKNVILSSSNPEPKSVPWVEKFRPQSLSDVAAHRDIVET
IDRLASSNRLPHLLLYGPPGTGKTSTILALARKLYGSQVNNMVLELNASDDRGIDVVRQQ
IQDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALICNNVNKV
IPALQSRCTRFRFAPLDAVHVSERLRHVIEAEQLDVPEGGLKALIRLSNGDMRKALNILQ
STHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEPFAISCKRISEIKTRKGLALVDIV
REVTMFVFKIKMPADVRVQLINEMADVEYRLTFGCNDKLQLGSLISAFTRARSALVAAAK
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggcggagacaatctcgttaatggatatcgacgatgacaaaattcacaccaaaccaaac
aagggtaaaaacgtaatcttatcaagctccaatcccgaacctaaatcagttccttgggtc
gaaaagtttcgtcctcagtccctctctgacgtcgctgctcatcgcgatattgtcgaaaca
attgataggcttgcgagtagtaataggttgccgcatttgctgctttatgggcctcctgga
actggaaagacatctacaattcttgctcttgcccggaagctatacgggtcgcaggtgaac
aatatggttttagagctgaatgcttctgatgatcgtgggattgacgtggtgcgtcagcag
attcaggactttgctagtactcagagcatctcatttggtgcaaagtcagcagtgaagtta
gtactattggatgaagcagatgcaatgacaaaggatgcacagtttgctttgcgtcgagtg
attgagaaatatacaagaaacactaggtttgccttgatatgtaacaatgttaacaaggtt
attcctgccctacaatcacgatgtacacgatttaggtttgctccactcgatgcagttcat
gtctctgagcgactgagacatgttattgaggctgaacagcttgatgtccctgagggtggt
ttaaaggcacttatacggttgagcaatggtgatatgcgaaaagctttaaacattttgcag
tcaacacacatggcttctcagcagattacagaagaagctgtatacctgtgcactggaaat
ccattgcccaaggacattgagcagatttcttactggcttttgaatgaaccctttgctatc
agttgcaaacgaatatcagaaatcaagacaagaaaagggttggctttggtggatatcgtg
agagaagtaaccatgtttgtcttcaagattaagatgccggcagatgttcgagttcagctg
atcaatgagatggctgatgttgagtataggttgacttttggttgcaatgataagttgcag
cttggttcactgatttctgcttttacacgagcaagatccgcactagttgcagctgcaaag
taa
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