Capsicum annuum (peppers): 107873064
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Entry
107873064 CDS
T04646
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03022
Basal transcription factors
cann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107873064
09124 Replication and repair
03420 Nucleotide excision repair
107873064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107873064
03400 DNA repair and recombination proteins [BR:
cann03400
]
107873064
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107873064
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107873064
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
IBR
Motif
Other DBs
NCBI-GeneID:
107873064
NCBI-ProteinID:
XP_016575265
LinkDB
All DBs
Position
12:66059919..66066165
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AA seq
265 aa
AA seq
DB search
MGKLGTSGDASLQNGLDLVRDLLNQIPSYGHLDVLILYSALSTCDLGDILETIQKCKAFK
LRCSVIGLFAELYICKHLCQETSGMYFVALDKPRLKELVLELAPPSPAIAEFAVANLIKM
GFPQRVAQGVISICLCHKEAKVGGGYTCPRCKTRICELPAECCICGLTLVSSPHLARSYH
HLFPIRPFDDVSPLVLKDLHKLPKNCFGCQLSLLNPGNLPGPQVACPNCKQHFCLDCDIY
LHESLHNCPVCESLRNSETSSDMEQ
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaattggggacctcaggtgatgcatcccttcagaatggcctagatcttgtgcgt
gatctcctaaatcaaatcccatcatatgggcatcttgacgtccttatcttgtattcagct
cttagcacttgtgatctaggagatattctggaaaccatccaaaagtgcaaagcatttaag
ttaaggtgctcagtaattggtctctttgcagaactctacatatgcaagcatctctgccaa
gagactagtggaatgtattttgttgcattggataagcctcgtttaaaagagttggtattg
gagcttgctccaccttctccagctattgcagagtttgctgttgcaaatttaatcaagatg
gggttcccccaaagagtagcgcagggtgtcatttcaatttgtttatgtcataaagaggct
aaagttggtggtggatacacttgtccgagatgcaaaacacgtatatgtgagctgccagct
gagtgctgcatctgcggcctgactcttgtttcttctccacatttggcaaggtcatatcac
catctcttcccaataaggccatttgatgacgtttcgccgttagttctaaaagatcttcac
aagttacctaagaattgctttggttgccaattaagtctcctaaatcctggaaatttgcca
ggtccacaggttgcttgtccaaactgcaaacaacacttctgccttgattgtgatatttat
ttacatgagagtttgcacaattgtccagtttgtgagagcttaaggaattccgagactagt
agtgatatggaacaatga
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