Capsicum annuum (peppers): 107873253
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Entry
107873253 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03013
Nucleocytoplasmic transport
cann03015
mRNA surveillance pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107873253
09122 Translation
03013 Nucleocytoplasmic transport
107873253
03015 mRNA surveillance pathway
107873253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107873253
03041 Spliceosome [BR:
cann03041
]
107873253
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107873253
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107873253
Spliceosome [BR:
cann03041
]
Complex C
Other components
EJC/TREX
107873253
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
107873253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
107873253
NCBI-ProteinID:
XP_016575505
UniProt:
A0A1U8GWM0
LinkDB
All DBs
Position
6:complement(110819481..110833879)
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AA seq
457 aa
AA seq
DB search
MGDTKENDAYEEELLDYEEDDEKAPDSISAKVNGESAKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAMV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRILA
LAGDKDLSLRNVRHFVLDECDKMLEALDMRRDVQAIFKMTPHDKQVMMFSATLSKEIRPI
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVS
RAAQLNKLLVDCNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQI
DTSSYSMLLPDVSILALTFISLCLLLFCTQGGGLVVQ
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacaaaggagaacgatgcttacgaggaggagcttctcgactatgaagaagat
gatgaaaaagcccctgattccatctctgccaaagttaatggcgagtccgccaagaagggt
tatgttggcattcacagttccggatttcgagactttctgctaaagccagagctattgcgg
tctattgtggattcagggtttgagcatccttctgaagtgcaacatgaatgtattccgcaa
gcaattctaggcatggatgttatttgtcaagctaaatctggaatgggcaaaactgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccatggtt
ctatgtcacacaagggaattagcttatcagatctgtcatgaatttgagaggttcagcaca
tacttgcctgatatcaaggttgctgttttctatggtggtgtaaatatcaaacttcacaag
gagcttctgaagaatgaatgccctcatatagttgttggaactcctggaagaatacttgca
ttggctggagacaaggacctgtctttgaggaatgtgaggcattttgtactggatgaatgt
gacaaaatgcttgaagcacttgacatgagaagagatgtgcaggcaattttcaagatgact
cctcatgacaagcaagtaatgatgttctcagcaacactcagcaaagagattcgccccatt
tgcaagaaattcatgcaagatccaatggaaatttatgttgatgatgaggccaagttgacc
cttcatggacttgtacagcactacatcaaattgagcgaagcagagaagaaccggaagctg
aatgacttgctggatgctttggacttcaatcaagttgtaatatttgtcaagagtgtaagc
cgagcagcacaactgaacaagttgcttgttgactgcaattttccatctatctgcatccac
tctggcatgactcaggaagagagattgactcgctacaagggtttcaaggaggggcacaaa
agaattcttgtggcaactgatttggttggcaggggtatcgacattgaaagggtcaatatt
gttattaactatgacatgccagattctgcagatacttaccttcacagagtgggtagagct
ggtaggtttggaactaaaggccttgccatcacatttgtctcatctgcatcagattctgat
gtacttaatcaggtccaggcaaggttcgaagtggatattaaagagcttcctgagcaaatt
gatacttcctcatacagtatgctgttacctgatgtttcaatactagcacttactttcatt
tcgttatgtttgttgcttttctgcacccaagggggtggcctagtggttcaatga
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