Capsicum annuum (peppers): 107873438
Help
Entry
107873438 CDS
T04646
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar sorting protein 18
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
cann
Capsicum annuum (peppers)
Pathway
cann04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
107873438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cann04131
]
107873438
Membrane trafficking [BR:
cann04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
107873438
Hops complex
107873438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
VPS18_RING_C
zf-RING_11
zf-RING_Vps41
zf_RING_Vps8
zf_RING_Vps8_fungal
RPN1_RPN2_N
zf-RING_2
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
107873438
NCBI-ProteinID:
XP_047258531
LinkDB
All DBs
Position
Unknown
AA seq
1016 aa
AA seq
DB search
MERGHHVFSVDLLERYATKGCGAITCMATGNDVIVLGTSKGWVIRHDFGVGDSYDIDLSI
GRPGEQSIHKVFVDPGGSHCIANVIGSSGADTYYTHAKWKKPRILGKLKGLVVNAVAXNR
QHITEASTREIILGMHNGQLYEMAVDVKDKMEKYIKLLFELKELPEAFTGLQMETTSVHN
GIRFYVMAVTPTRLYSFTRIGLLETIFASYVDRTVHFMELPGEIPNSELHFFIQQRRAVH
FAWLSGAGIYHGDLKFGAQHSLPNVDENFVENKALLDYSKFSEGGEGVKPSSLAISEFHF
LLLIGNKIKVVNRISEQIVGELYFDQTPDAVSRGIIGLCSDASAGLFYAYDQNSIFQVSV
NDEGHDMWKVYLNLKEYAAALASCRDAMQRDQVYLVQAETAFVAKEFLRAASFYAKINYV
LSFEEISLKFISIGEQDALRTFLLRKLDILSKDEKCQITMISTWATELYLDKINRLLLED
DVALDSNNSEYQSLIKEFRAFLSDCKDVLDEATTMKLLESYGRSDELVFFASLKEQYEIV
LHHYIQQGAAKKVLQVLQKPNVPTELQYKFALDLIMLDAYETVESWMTTKSLNPRKLIPA
MMRYSSEPHAKNETHEVIKYLEYCVHRLQNEDPGIHNLLLSLYTKKEDESALLSFLECKF
GKGQPGGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAETD
KVEDDEDLRKKLWLMIAKHAIEQEKGTKRENIRKAIAFLKETDDLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNEQXEKLKHEMNDATRGADNIRNDISALAQRYIVIDRDEECGIMV
CRRKILNVGGDYRMTTGYMAVGPMAPFYVFPCGHAFHAQCLIAHVTRCTNQAQVEYILDL
QKQLTLLGAEPKNVSNGGLSEEPLASVTPMHKIRSQLDDAVANDCPFCGELMIREISLPF
ILPEAAEESESWEIKPHNHPSQRSLSLCVILSSVSGELLIREVSPCNCLFEVFPRK
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaggacatcacgttttctctgttgatcttcttgaaagatatgccacaaaaggc
tgtggagccattacatgcatggcgactggcaatgatgtcatcgttcttggaaccagcaaa
ggctgggtgatcagacatgactttggagtgggtgattcttatgatatagatctatctatt
ggcaggcctggggaacaatcaattcataaggttttcgttgaccctggagggagccactgt
attgccaatgttattggtagtagtggtgccgatacatattatactcatgctaaatggaaa
aagcctcgtatattgggcaaactaaaaggtcttgttgtcaatgctgtcgcctagaacaga
caacatattacagaagcttctactagagaaatcattttgggtatgcacaatggtcaactt
tacgagatggctgtagatgtaaaagataaaatggagaagtacataaagttgctatttgaa
cttaaagaactacctgaggcatttacgggtttgcagatggaaacaacaagtgtgcacaat
ggtatcagattttatgtgatggctgttacacctactcgactttattctttcacaaggatt
ggattgcttgaaacgatttttgcaagctatgtggaccgcactgttcattttatggagctt
cctggtgaaatacctaacagtgaactgcacttctttatccagcaaaggagggctgtacac
ttcgcatggctttctggagcaggtatctaccatggtgacctaaaattcggagcacaacat
agtttgccaaacgttgatgaaaactttgtggaaaacaaagctcttctggattactctaaa
ttctctgaaggaggtgaaggagttaaacctagctctctggctatatccgagtttcatttc
ctacttctcattggtaacaagattaaggtggtgaacaggataagtgaacaaatagtagga
gaactttattttgatcagacacctgatgcagtttcaagaggtattattggcttatgtagt
gatgcctcagctgggttgttttatgcatatgaccaaaattctatcttccaggtatccgta
aatgatgaaggccacgatatgtggaaagtgtacttgaacttgaaagaatatgctgcagct
ttggctagttgtcgtgatgctatgcagagagaccaagtttatctggttcaggctgaaact
gcttttgttgccaaggagttcctcagagctgcatcattctatgcaaaaattaactatgta
ttatcttttgaagagatctcgttgaagttcattagcataggggaacaggatgcattgaga
acatttctcctgcggaagcttgatattctttcaaaggatgaaaagtgtcaaataactatg
atttcaacatgggcaactgaattatatcttgataagatcaatcggctgcttctggaagat
gatgttgcattggacagtaataattccgagtaccaatcactcattaaggagtttcgtgct
ttcctaagtgactgcaaggatgtattggatgaggcaaccaccatgaaactactggaaagc
tacggtagaagtgatgagttagtgttctttgctagtctaaaggagcaatatgaaattgtg
cttcaccactacattcagcaaggagcagcaaagaaggtgttacaagttcttcagaagcct
aatgttccaacagaacttcagtacaagtttgcgctagatctcatcatgcttgatgcatat
gaaactgttgagtcatggatgaccaccaagagtttgaacccgagaaagctcattcctgca
atgatgcgttattcaagtgaaccacatgcaaagaatgaaactcatgaagtaatcaagtac
ctggaatattgtgttcatcgtttacagaatgaggatcctggcattcacaatctgttactt
tccttatataccaaaaaggaagatgagagtgctcttctgagtttcctagaatgcaagttt
ggtaaagggcaaccaggtggccctgaattcttttatgatcccaaatatgcgctacgcctt
tgcctcaaggaaaagagaatgcgagcttgtgttcatatatacagcatgatgtctatgcac
gaagaagcagttgcccttgcactacaggttgatccagagcttgcgatggctgaaacagac
aaggtagaagatgatgaggacttgaggaagaagctttggcttatgattgctaagcatgcc
attgagcaggaaaaaggaaccaaaagggaaaatatacgaaaggcaattgcttttctcaag
gaaactgatgatcttttaaagattgaggacatcttacctttcttcccagactttgcttta
attgatgacttcaaggaagcaatttgctcatccttagaggattacaatgagcaantcgaa
aaactaaagcacgagatgaatgatgcaacccgtggtgccgataacattagaaatgacatc
agcgctcttgctcaacgatatattgtcattgatcgggatgaggaatgtgggataatggtt
tgtcggcggaaaatattaaatgtgggtggtgactatcgaatgactacaggttatatggct
gttggaccaatggctcctttctatgtcttcccatgtggacatgcgtttcatgcacaatgc
ctgattgctcatgtgacaaggtgcactaatcaagctcaagtcgaatacattttggatctg
cagaagcaacttactttacttggtgctgaacctaagaatgtgtcaaatggtggcttgtct
gaagaaccgctagctagcgtgacacccatgcataagatccgttcacagctggatgatgct
gtagccaatgattgcccgttttgtggtgaacttatgatccgagagatttctttgcctttc
atccttccagaagcagcagaagaatctgaatcgtgggagataaagccacataatcatcct
agtcagaggagcctttccctgtgtgtgattttatcatctgttagtggtgaacttctgatc
cgagaggtttctccctgcaattgcttgtttgaggttttccccagaaaatga
DBGET
integrated database retrieval system
