Capsicum annuum (peppers): 107873478
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Entry
107873478 CDS
T04646
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107873478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107873478
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107873478
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107873478
mRNA degradation factors
3'-5' decay
Ski complex
107873478
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
AAA_22
CHCH3_N
Motif
Other DBs
NCBI-GeneID:
107873478
NCBI-ProteinID:
XP_016575822
UniProt:
A0A1U8GX39
LinkDB
All DBs
Position
6:29964759..30013493
Genome browser
AA seq
1358 aa
AA seq
DB search
MDRIVAANELSFRIGFTGHSGHLRIEPLPPVERDTPLNSIPDFILPPAFPKETPESIKEY
IKEKYLLPQLDADEFSPEKAGRQWEFDWFERAKILPDPSLPRSVVVPKWEVPFRRQRDSL
DNGVWEPKSEERDLSELTVGADDSGALPRIVGPPKDFVRGSINNRPFRPGGLDDSPSLGR
VVPDGATNGEWVKEVLNGGPAQTAPPSFKQGPDLGDLQGRHSCSWNIYEDQSAVTNTVES
ELSVQFDDLFKKAWQDDVTEFIGDGHTSELQSEAEQLTSVKPEPLQVEAEVNTSEVVNEG
LETETSVLDEILSVEAEGSILRLDGDNGGARQENEGWAVTGGSEVFVERFHDLIPDMALT
FPFELDPFQKEAIYHLEKGNSVFVAAHTSAGKTVVAEYAFALAAKHCTRAVYTAPIKTIS
NQKYRDFCGKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADMIRDIEWVIFDEVHY
VNDVERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKQIRVTGTTKRPVPL
EHCLFYSGELYKVCENEEFLSHGFKVAKDVHKKKTTSSVSGGTSLRPGSSTAADRGRGQR
RDNSSQAKQHKHSGPQKFGNFGAGWGTQSNGPGQNVMGLRRSEASLWLTLINKLLKKSLL
PVVIFCFSKNRCDKSADNILGTDLTSRSEKSEIRTFCDKAFSRLKGSDRNLPQIVRIQSL
LHRGIAVHHAGLLPIVKEVVEMLFCRGLVKVLFSTETFAMGVNAPARTVVFDSLRKFDGK
EFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEIPYENDLKNVIIGTATRLESQFRLT
YIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMLKLAQPTKSVECIKGEPAIE
DYFDMYSEAEKYSHQIAEAVMQSPVPQQYLTTGRAVVVKSQSGQDHLLGVVVKTPSSNNK
QYIVLVLTPELPSTLETSSDASNRKDQKTAEFQILMPKSRRGYEDEYCSSVTSRKGSGVV
NIKLPHRGNAAGMNYEVRGVDNKDFLSICVKKIKIDQVRLLEDVSSGAYSNAIQQLLGLK
SEGNKYPPALDPVKDLKLKDVNLVEAYYKWNNLLQKMAQNKCHGCIKLDEHMKLARELKR
HREEVNALKFEMSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELIC
TECLFENQLDDLEPEEAVAIMSSFVFQQKETSESFLTPKLSQAKKRLHETAIKLGELQAQ
FKLPIDPQEYAQENLKFGLVEVVYEWAKGTPFAEICELTDVPEGVIVRTIVRLDETCREF
RNAAAIMGNSALYKKMETASNVIKRDIVFAASLYITGV
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatagtagcagcaaatgaactgtcatttcgtatagggtttacaggacacagt
ggtcatctcagaatcgagcctctccctcctgtcgaacgcgatactcctctcaattctata
cctgacttcatattaccacctgcatttccaaaggaaacacctgaatcaataaaggaatat
atcaaggagaagtatctattgcctcagctggatgcagatgagttttctcctgaaaaagcc
ggaaggcagtgggagtttgattggtttgagagagctaaaatccttccagatccatctttg
cctcgatctgttgtagttccaaaatgggaagttccttttagacgtcagagggacagtttg
gataacggagtatgggagccgaagtcagaggagagagatctatcagaacttacagttgga
gctgatgattctggggctctaccgcgcattgttggaccaccaaaggattttgttagagga
agcatcaacaatcgtccgtttcgacctggtggcttggatgattccccttcattgggtaga
gtcgttcctgatggtgctacgaacggtgaatgggtaaaggaggtgcttaatggcggtcct
gcccagacggctccgccaagctttaagcaaggacctgatcttggcgatcttcaggggaga
cattcatgctcttggaatatatatgaggatcagagtgctgtcacgaacacagtagagagt
gagttatccgtgcagtttgatgacttgttcaagaaagcttggcaagatgatgtcacggag
tttattggagatggtcatacatctgaattgcaatctgaagcagaacaattgacatctgtc
aagccagagccacttcaggttgaagctgaagtaaacacgtctgaagtggttaatgagggt
ttagaaactgagacatctgtcttggatgagattttgtctgttgaagcagaaggatcaata
ttaagattggatggggataatggtggggcacgtcaagagaatgagggatgggctgttact
ggtggcagtgaagtatttgtagaacgatttcatgatctcattccagatatggctcttact
ttcccatttgaacttgacccctttcaaaaggaggccatctatcatcttgaaaaggggaac
tctgtttttgttgctgctcatacatctgctgggaagactgttgtggcagaatatgcattt
gctttggcagctaaacattgtaccagggctgtatatacagctccaatcaaaacaatcagc
aatcagaaatacagagatttttgtgggaaatttgatgttggccttctcacaggtgatata
agcttgagacctgaggcttcttgtcttataatgaccactgagatattaaggtcaatgctt
tatagaggggctgatatgattcgggatatagaatgggttatatttgatgaagtgcattat
gtcaatgatgttgaaagaggtgttgtttgggaggaagttattattatgctcccaagacat
atcaactttgtcctcctttcagcgacggtaccaaacacaattgaatttgcagactggatt
ggtcgaaccaaacaaaagcaaattcgtgtgactgggacgactaaaagacctgtccctttg
gaacactgtctcttctattctggggagctttacaaagtgtgcgagaacgaagagtttctg
tctcatggatttaaagtagccaaagatgttcataagaagaaaaccacaagttctgtctct
ggtggcaccagcttgcgtcctgggtcttcaacagctgctgataggggtagagggcagagg
cgtgataactcttctcaggcaaagcagcacaagcattctggtccccaaaaattcgggaat
tttggtgctggttggggaacacaaagcaatggcccagggcagaacgttatggggttaagg
agatcagaggcgtctttgtggttgacactgattaataagctcttgaagaaatcgctgtta
cctgtggttatattttgtttttctaagaatcgatgtgacaaatcggctgataacatcctt
ggtactgatctcacaagtaggtctgaaaaaagtgaaattaggacgttctgtgataaagca
ttttcgaggcttaagggatctgacagaaacttaccacagattgtcagaattcaaagcctt
ctccacaggggcattgctgtgcatcatgcaggactcctcccaattgtcaaggaagtcgta
gaaatgcttttttgtcgaggtttggttaaggttctgttctcgacagagacatttgcaatg
ggagttaatgctccagccaggacggttgtttttgattctctaagaaagtttgatggcaag
gaatttaggcagctacttcccggagagtacactcagatggctgggcgtgctggaaggaga
ggacttgataaaactggtactgttgtggtgatgtgccgagatgagatcccttacgaaaat
gatttgaagaatgtaataatcggtactgcaactaggcttgaatctcagtttcgactgacc
tacatcatgattttgcatctacttcgggttgaagaacttaaggttgaggacatgctgaaa
agaagttttgctgaatttcatgctcagaagaaactacctgagcaacaacaactcttgatg
ctaaagcttgctcagcctacaaaatctgttgaatgcataaagggtgaaccagcaattgag
gactactttgacatgtattcggaggcagaaaaatatagccaccaaatagcagaggcagta
atgcagtcgccagttcctcagcagtaccttactactgggagagcagtggttgtaaaatca
caatcaggtcaagatcacttactaggtgttgtggtgaagacaccttcctctaacaacaaa
caatatatagttctagttctgactcctgaattgccttcaaccctggaaacttcgtcagac
gcaagcaacaggaaagaccaaaaaactgctgaatttcagatattaatgcctaaatcaaga
cggggttatgaggatgagtattgttcatcagtcacctcccggaagggatctggcgttgtc
aacatcaaattgcctcaccgcggtaatgctgccgggatgaattatgaggttcgaggagtt
gataacaaggattttttgtctatatgtgtgaaaaagattaagattgaccaagttcggctt
cttgaagatgttagttctggggcctactctaatgcaatacagcagctgctgggtctgaaa
tccgaaggaaataagtatcctccagccttagatccggttaaagatctgaagttgaaagac
gtgaatcttgtggaagcatactacaaatggaataatctcttgcagaaaatggcacagaat
aagtgtcatggttgtattaaattggatgagcacatgaaattagctagagaattaaagcgg
caccgagaggaagtgaacgctttgaagtttgaaatgtcagatgaagcacttcagcagatg
ccagattttcagggtcggatagatgtgttaaaagaaattggctgtatagatgctgacctt
gtcgttcaaatcaaaggtcgtgttgcttgcgaaatgaattccggagaggagttgatatgc
acagaatgtttatttgagaatcaactagatgacctggaaccagaagaggcagtggctatc
atgtcttcctttgtgtttcagcagaaggaaacttctgaatctttcctcacgccaaagctt
tctcaggctaaaaagagattgcacgaaactgcaataaaacttggggagcttcaggctcag
tttaagctaccaattgatcctcaggagtatgcccaagagaaccttaagtttggtttggtt
gaagtggtatacgaatgggcaaagggcaccccatttgctgagatttgtgaactcaccgat
gtccctgaaggtgtaatagtgaggacaattgtcagattagacgagacatgtcgtgaattt
agaaatgctgcagcaattatgggcaactctgctctgtacaagaaaatggaaactgcatct
aatgtgatcaagcgtgatattgtgtttgcggctagcttgtatattactggggtttga
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