Capsicum annuum (peppers): 107873713
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Entry
107873713 CDS
T04646
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03022
Basal transcription factors
cann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107873713
09124 Replication and repair
03420 Nucleotide excision repair
107873713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107873713
03036 Chromosome and associated proteins [BR:
cann03036
]
107873713
03400 DNA repair and recombination proteins [BR:
cann03400
]
107873713
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107873713
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107873713
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107873713
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107873713
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
AAA_11
Motif
Other DBs
NCBI-GeneID:
107873713
NCBI-ProteinID:
XP_047269348
LinkDB
All DBs
Position
6:complement(1121394..1134514)
Genome browser
AA seq
758 aa
AA seq
DB search
MKFQLEDITIYFPYDNIYPEQYQYMLELKRTLDAKGHCLLEMPTGTGKTISLLSLITSYR
LCKPMSQIKLLYCTRTVHEMEKTLAELKLLYDYQLKEFGPGARMLAIGLSSRKNLCVNPV
VVSAENRDSVDAGCRKLTASWVRALAVENPNVPTCSFFENYDAADKAGSATLPAGVYTLQ
ELRLYGKEKGWCPYFLARHMVQQANVVVYSYQYLLDPKVAGIISKEMERECVVVFDEAHN
IDNVCIEALSVSVRKQTLEGATRNLGRMSQEIERLKATDAGRLRAEYNRLVEGLAQRLPD
QDVWLANPALPDDIMKEAVPGNIRKAEHFLSVLRRFVQYLKGRLETENVEKEGLVGFVAS
INTQVGIDQKMLKFCYDRLHSLMLTLEITDTDEFLHVQTVCDLATLVGTYSRGFSIIIEP
TDERMPEIRDPVLQLTCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFNPVVSRS
LKMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWHESGILKDIMQHKLVFIETQDVVETTLALDNYRRACDSGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAVYIAKEF
LRKMAQPYDKNGALGKKTLLSQEDLANMITGPDGEMLL
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccaattagaagacataacaatctatttcccatatgacaacatctatccagaa
caataccaatacatgttagaactcaaaagaaccttagatgctaaaggacattgtcttctt
gaaatgccaacaggaactggaaagacaatttctttactttctttaataacaagttataga
ctttgtaaaccaatgagtcaaattaagcttttatattgtacaagaactgtacatgaaatg
gaaaaaacattagctgagcttaaattattgtatgactatcagttaaaggagtttgggccg
ggggcaagaatgttggctattgggttgtcatcaagaaagaatttgtgtgtgaatccagtt
gttgtgtctgctgagaatagggattctgttgatgctggttgtaggaagttaactgctagt
tgggttagagcacttgctgttgagaatcctaatgtccctacttgttccttttttgagaat
tatgatgctgctgataaggctggtagtgccactttgcctgctggtgtttatactttgcag
gagctaagattgtatggtaaggagaaaggttggtgtccatactttttggcccggcatatg
gtgcagcaggcaaatgttgtggtttacagctaccaatacctgcttgatcccaaggttgct
ggtattatatcgaaggagatggagagggagtgtgttgtagtgtttgacgaggcccataat
atagacaatgtatgtatcgaggcacttagtgtcagtgtgaggaagcagacacttgaaggg
gcaacaaggaatctcggtaggatgtctcaggaaattgaaaggctgaaggctactgatgct
ggtcgattgcgtgccgagtataatcgtctagttgagggtttagctcaaagactgcctgat
caggatgtatggcttgctaatcctgccttgcctgatgacatcatgaaggaagcagtccca
ggaaatataaggaaagcggagcacttcttgtctgttttgcgaagatttgtccaatatctt
aaagggcgtctagagactgaaaatgtggaaaaggagggtcttgtaggctttgttgcttct
attaatacacaagttggaatcgaccaaaagatgttaaaattttgttacgataggcttcac
tcccttatgttaaccctggagataacggatacagatgagtttctgcatgtacaaactgtt
tgtgaccttgccacattggtagggacgtattctcggggattttctattataattgaacca
actgatgagaggatgccagaaattcgtgatcctgtccttcagcttacttgtcatgatgcc
tctcttgccataaagcccgtttttgaacgattccagtctgttgtgattacctctgggacc
ctcagtccaattgatctctatccacgtcttctcaattttaatccggtagttagtcgaagc
ctcaagatgtcattgacaagggattgcatatgcccaatggtccttacacggggaagtgat
cagcttcctgtaagcactaagtatgacctgagaagcgatccgggcgtcgagaaaaattat
gggaagcttttgcttgaaatggtttctgttgttccagatggggttgtctgttttttcgtc
agttactcatatatggacggaatcgtcaatagttggcatgaatcaggaatattaaaggat
ataatgcaacataaactcgtatttatcgagacccaggatgttgtagagactacattggct
ttggataattatcgcagggcttgtgatagtgggaggggtgcagttttcttctctgttgct
aggggaaaagtggctgaaggtatagactttgatagacactatggcaggcttgttatcatg
tttggcgttccgttccaatacacgctaagcagaatattgcttgcgcgattggagtatcta
agggagactttccagattaaagagggcgattttctaacgtttgatgctttgaggcaagct
gctcaatgtgtgggtcgagttatccgttcaaaggcagattatgggatgatgatttttgct
gataaaagatatagccggcatgataagcgctccaagttgcctggatggatactttcacat
ttgcgggatgctcacctgaacttaagtacggacatggccgtgtatatagcaaaagagttt
ttgagaaagatggctcagccatatgataagaacggtgcgctgggcaagaaaactctactg
tcacaagaagacttggcgaatatgatcaccggccctgacggggagatgttgctttaa
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integrated database retrieval system
