Capsicum annuum (peppers): 107874909
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Entry
107874909 CDS
T04646
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107874909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107874909
03012 Translation factors [BR:
cann03012
]
107874909
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107874909
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107874909
Translation factors [BR:
cann03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107874909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
nSTAND3
ATPase
AAA_16
AAA_19
T2SSE
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
107874909
NCBI-ProteinID:
XP_016577106
UniProt:
A0A1U8H0T7
LinkDB
All DBs
Position
1:complement(43911863..43935683)
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AA seq
1165 aa
AA seq
DB search
MHSPRRLALLLSCTKRSSLFSSHLTSHLNRTKKIFATSYSRRILVGSDLREVYYFPESNF
RWLGQVREFCGYPGTAAVEQFSDDEYECDYENHPASSSVANVDEWKWKLSLLSRNEKDQE
IVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVVIPL
SLQRRVEGLLQEHIDRTQLSSGKTDNILDGTKSSDIVVDANKDEIPDSFLDGSVMEKVLQ
RRSLRMRNMQRGWQESPDGNKMLEFRKSLPSFKEKERLLQAIARNQVVVISGETGCGKTT
QLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLEGVK
GKNTHLLFCTSGILLRRLLGDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLR
LILMSATLNAELFSSYFGGAPMIHIPGFTYPVRANFLEDVLEITGYKLTSFNQIDDYGQE
KMWKTQKQLAPRKKKNQITALVEDAVNKSNFENYSARTRDSLAYWAPDCIGFNLIEAVLC
HICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEK
PPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQR
RGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAAL
QPPESLAVQNAIHFLKMIGALDENENLTHLGKFLAILPVDPKLGKMLIMGAIFRCFDPIL
TIVAGLSVRDPFLLPQDKKDLAGSAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYC
WRNFLSAQTLQAIHSLRKQFVFILKDAGLLDADTATNNKLSYNQSLVRAVICSGLYPGIA
SVVHRETSMSFKTMDDGQVFLYANSVNARYQTIQYPWLVFGEKVKVNTVFIRDSTGVSDS
IVILFGSTLDCGDMAGHLKMLGGYIEFFMDPTLADCYIKLKEELEILLQKKLQDPEIDIH
KEGKYLMLAVQELVSGDQCEGRFVFGRENKKPKDSKDTDRFTRDGTNPKSLLQTLLMRAG
HSPPKYKTKHLKTNEFRALAEFKGMQFVGKPKRNKVLAEKDAAIEALAWLTQTSEKNHDE
DDKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcattctccgagaagactagcgcttctcttatcatgcacaaaaaggagttctctattc
tcttctcatctaacttctcatctaaatcggacgaagaagatatttgcgacttcttacagc
cgaagaattttggttggtagtgatttacgtgaggtttattacttcccggaatcgaatttt
cggtggttgggacaggtgcgtgagttttgtgggtaccctggtactgcagctgtcgaacag
ttttctgatgatgaatatgaatgcgactacgaaaatcacccggcttcgtcatcagtggcc
aatgtagatgagtggaaatggaaacttagcctgctgtcgcgcaatgaaaaggatcaagaa
attgtatccagagataaacgggatagaagagactatgaacaaatatctaacctagctaaa
aggatgggtctctatagtgaaatttatgggaaggttgtagtggtgagcaaggttcctctt
ccaaattacagacctgatcttgatgataagcggccccaaagagaggtagtaattccacta
agtctgcaaaggagagtagaaggcttgcttcaggagcatatcgatcgaacacaactcagt
agtggaaaaactgacaacattttagatggtactaagtcctctgatatagttgtagatgcg
aataaggatgaaattccagattcattcttagatggctctgtcatggagaaggttcttcag
aggcggagcttacgcatgcgtaatatgcagaggggttggcaggaatctcctgatggcaac
aaaatgctagaattccgaaaatctcttccatcatttaaggaaaaggaaaggttgctccaa
gcaattgcacgtaatcaggtggtagtaatttctggtgagacgggatgtggtaagaccact
caactgccacagtacattctagagtcagaaatagaatctggtcgtggagcattttgtagc
ataatttgtacgcagcctcgaagaatatctgctttggctgttgcagaaagagtggctaca
gaaaggggagaacctcttggtgactcagtcggttataaagtacgattagaaggggtgaag
ggaaaaaatacacatttgctattttgtacgagtggtattttgcttcgtcgtcttctcggt
gaccgcaatcttgatggtataacccatgttttcgttgatgaaattcatgagcgaggaatg
aatgaagatttcctgttgattgtgttgaaggatcttcttccgcgacgcccagatttgaga
ttgattttgatgagtgctactcttaatgctgaattattttccagttactttggtggggca
cctatgattcacatcccaggcttcacatatcctgtaagagcaaactttttggaagatgtg
ctggaaattacgggatataagttgacttcattcaaccaaattgatgattatggccaggag
aagatgtggaaaacacaaaagcaattagcaccccgcaaaaagaagaatcagataactgct
ctcgttgaggatgctgtaaacaaatcaaacttcgagaattatagtgcaaggacgcgtgat
tcactagcatactgggcacctgattgtattggattcaatcttattgaggcagtattgtgc
catatatgtcggaaagaacgtccaggcgctgtattagtatttatgactggttgggaagac
attagttgtttaagagatcaacttaaagctcatcctctcttgggtgatccaaatagagtg
ttgctgctcacttgtcatggttctatggctacctctgagcagaaactcatatttgagaag
ccacctcagaatgtacgtaaaatagtacttgctacaaatatggcagaggcaagtattact
ataaacgatgtggtctttgtagtggactgtggaaaagctaaggagacgacgtatgatgcg
ctaaataatactccatgcttattaccttcatggatttcacaagcttctgcgcgacaaaga
aggggtagggctggtcgtgtccaaccaggcgagtgctaccacttgtatccaagatgtgtg
tatgaagcttttgctgaatatcaactacctgaactcctgagaactcctttgaattctctt
tgcctgcaaataaagagtctgcaggttggaagtattgctgaatttctatcagctgctctt
cagccaccagagtcattggctgtgcaaaatgctattcactttttgaagatgattggtgca
ttagatgaaaatgagaatcttacacatctaggaaagtttttagcaatccttcctgtggat
cccaagcttgggaaaatgctcattatgggcgctattttccgttgctttgatcctattctg
accatagtggctgggctgagtgtacgggatccatttctattgcctcaagataaaaaggat
ttagcagggtctgcaaaatccagattctcagccaaggactatagcgaccatatggcgctt
gttcgtgcatacgaaggatggaaagatgctgaaagggaaggttctgcctacgaatattgc
tggcggaatttcctctctgcccagactcttcaagctattcattctctaagaaagcaattt
gtcttcatcttgaaagatgctggattgcttgatgctgatactgcaactaacaataaacta
agttacaatcagtctttagttcgtgcggtcatatgttctggcttgtatcctggaattgca
tcagtggtgcacagagagacatcaatgtccttcaagactatggatgacggacaagtcttt
ctttatgcaaattcagtcaatgctcggtatcaaacgattcaatacccatggctggtgttc
ggcgagaaagtgaaggtcaatacagtcttcatacgggattctactggagtatctgattcg
attgtgatcctatttggtagtactctcgactgcggagatatggctgggcatttgaagatg
ttgggtgggtacatagagttcttcatggatcctactctggcagattgctatataaagctc
aaagaggagctcgaaatacttttgcaaaagaagcttcaagatcctgagatagacatccac
aaggaaggcaaataccttatgcttgccgttcaggaactggtttcaggagatcagtgtgag
ggcaggtttgtgtttggtcgtgaaaacaagaagcctaaagattctaaggacactgacaga
tttacaagggatggaacaaatccaaagagtttgttgcaaaccctacttatgagggccggt
cactcccctcccaagtacaaaacaaagcatctaaaaacaaatgaatttagggcacttgca
gagttcaagggaatgcaatttgtaggtaaaccgaagagaaataaagtgcttgcagaaaag
gatgctgcaatagaggcactagcatggttaactcaaacatctgagaagaatcatgacgaa
gatgataaatctcctcctgatgtcaccgacaacatgctgaaacttcttggtaaacgcagg
agatcgaagcgtcgctga
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integrated database retrieval system
