Capsicum annuum (peppers): 107875462
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Entry
107875462 CDS
T04646
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107875462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107875462
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107875462
Spliceosome [BR:
cann03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107875462
Complex C
U5 SnRNP specific factors
107875462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
107875462
NCBI-ProteinID:
XP_047270120
LinkDB
All DBs
Position
6:224103514..224116878
Genome browser
AA seq
2177 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPSGEPESLYGKIDPKSFGDRAY
KGRPPELDEKLQKARKKKERDPLVSEPTRQSKKRRLQEESVLTSSEEGVYQPKTKETRAA
YEAMLSLIQQQLGGQPLNIVSGAADEMLAVLKNDNFKNVDKKKEIEKLLNPISNQVFDQL
VSIGRLITDYQDGGGASASAAADGDEALDDDVGVAVEFEENEEEEEESDLDVVPDDEEED
DDVMEPSASGAMQMGSGIDDDELREADEGMALNVQDIDAYWLQRKISQAYEQQIDPQQSQ
KLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKYLLRNRLKVVWCTRLARAEDQENRK
KIEEEMLGLGPDHVAILEQLHATRATAKERQKNLEKSIREEARRLKDESGVDGDGERKAL
VDRDLDNGWLMGQRQFLDLESLAFHQGGLLMANKKCELPVGSYRNHKKGYEEVHVPALKP
RPLDPGEKLVTIASIPEWAQPAFSGMTQLNRVQSKVYETALFSPENILLCAPTGAGKTNV
AMLTILQQIALNRNEDDGTFNHNNYKIVYVAPMKALVAEVVGNLSKRLEHYGVNVKELSG
DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI
IARTIRQIETTKEHIRLVGLSATLPNYEDVAVFLRVDLKKGLFHFDNSYRPVPLAQQYIG
ITVKKPLQRFQLMNDVCYEKVISIAGKHQVLIFVHSRKETSKTARAIRDTALANDTLGKF
LKEDSITREVLQSQTELVKSNDLKDLLPYGFAIHHAGMVRADRQLVEELFADGHVQVLVS
TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIILT
GHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVLNAKEACKWLLYTYLYVRMVR
NPTLYGLPADALKTDYALEERRADLVHSAAIMLDKNNLVKYDRKSGYFQVTDLGRIASYY
YITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKES
LEEPSAKINVLLQAYISRLKLEGLSLSSDMVYITQSAARLMRALFEIVLKRGWAQLAEKA
LKWCKMISKRMWSVQTPLRQFHGIPNEILMKLEKKDLAWERYYDLSSQELGELIRFTKMG
RVLHKFIHQFPKLNLSAHVQPITRSVLRVELTITPDFQWEDKVHGFVEPFWIIVEDNDGE
YILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTVLPVSFRHLIL
PEKYPPPTELLDLQPLPVTALRNPAYEGLYQDFKQFNPVQTQVFTVLYNSDDNVLVAAPT
GSGKTICAEFAILRNHQKGPDSTIRAVYIAPLEALAKERFSDWKKKFGDHLGMRVVELTG
ETASDLKLLEKGQLIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPILEVI
VSRMRYISSQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV
DIANFEARMQAMTKPTYTAIVQHARNGKPAIVYVPTRKHARLTAVDLMTYSSMDSEDTPI
FLLRSAEELGPFVDRINEPMLQETLKYGVGYLHEGLSATDQDIVKTLFETGWIQVCVMNG
TMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLVDNSGKCVILCHA
PRKDYYKKFLYEAFPVESHLQHYLHDNLNAEVVVGVIQNKQDAVDYLTWTFMYRRLTQNP
NYYNLQGVSHRHLSDHLSELVENTITDLEASKCVTVEDEFLLSPLNLGMIASYYYISYTT
IERFSSSVTSKTKLKGLLEILASASEFEQLPIRPGEEELIRRLINHLRFSFENPKYTDPH
VKANALLQAHFSRQLLGGNLASDQQEVLLSATRLLQAMVDVISSNGWLSLALLTMEVSQM
VTQGMWERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRALLQMSDLQLL
DIARFCNRFPNIDLAFDVLDSNNVSAGDDVSVQVILERDLEGRTEVGPVFAPRYPKAKEE
GWWLVVGDTKSNQLLAIKRVTLQRKSRVKLDFAAPAEAGTRNYTLYFMCDSYLGCDQEYN
FTLDVKPSMAEDDSGRE
NT seq
6534 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttgggaggaggtgcagaagcacatgcacgtttcaaacagtatgagtataga
gcgaactcaagtcttgttctaactactgattctcgtcctcgagatactcatgaaccttct
ggtgaaccggagtctctttatggaaaaattgacccgaaatcgtttggtgatcgagcttat
aagggtagacctccggagttggatgagaagcttcagaaagctaggaagaagaaggagcga
gatccgcttgtatctgagcctactaggcaaagtaagaagaggagacttcaggaagaaagt
gtacttacttcgagtgaggaaggtgtttatcagcctaagacgaaggagactagggctgct
tatgaggcgatgcttagtttgattcagcagcaacttggtggacagccacttaatattgtg
agtggggcagcggatgagatgttggcagtgttgaaaaatgacaacttcaagaacgttgat
aagaagaaggagattgagaagctgttgaatccgatatcgaatcaggtgtttgatcagttg
gtgtcgattgggaggcttattactgattatcaggatggggggggagcgtcagcgtctgct
gcagctgatggtgatgaggctcttgacgatgatgttggtgtagcagttgagtttgaggag
aatgaagaagaggaagaagagagtgatcttgatgtggtacctgatgatgaagaggaggac
gatgatgtgatggaacccagtgcttctggcgctatgcagatgggcagtggtattgatgat
gatgagctgcgggaggcggatgagggtatggccttgaatgttcaagacatagatgcttat
tggcttcaaagaaagatttcccaagcttatgagcagcagattgatccgcaacagagccaa
aaacttgctgaagaggttctcaaaattcttgctgaaggcgatgatcgcgaagtagaaacc
aagctgctggtgcatctccaatttgataagttcagtctcatcaaatatcttctgcggaac
cggcttaaggtagtatggtgtacccgtcttgcaagagctgaagaccaagagaataggaag
aaaattgaagaagagatgttggggttgggtccagatcacgtggctatattagaacagttg
catgctactagggctactgcaaaagagaggcagaagaatctggagaaaagcattagagaa
gaggctcggcgtcttaaagatgagtctggtgttgatggtgatggagaaaggaaggcactt
gtagatagagatcttgataatggctggttaatggggcagcgtcagtttcttgatcttgag
agcctcgcatttcatcaagggggtttgttgatggcaaataagaaatgtgagcttccagtg
gggtcttacaggaatcataagaaggggtatgaggaagttcacgtgccggcattgaagcca
aggccactagaccctggggaaaagcttgtgacgatagcctccatcccagagtgggctcaa
ccagcattcagtgggatgacccaattgaacagggtgcaaagtaaagtatatgagactgcc
ctcttttctccagagaacattttgctttgtgctccaactggtgccgggaagactaatgta
gctatgctcactatacttcagcaaattgcactaaaccgcaatgaagatgatggaacattc
aaccacaacaactataagattgtatatgtggcacccatgaaagcccttgttgctgaagtg
gttggtaatctttccaagcgtttggaacattatggtgtcaatgtgaaagagttgagcggt
gatcagacattaactcgtcagcagattgaagagactcaaattattgtgactaccccggag
aagtgggatattataaccagaaagtcaggcgatcgcacctatacacagcttgttaaactt
cttattattgatgagattcatctcctgcatgacaaccgaggtcctgtcttggagagtatc
attgctagaactattagacagatcgaaaccacaaaagagcatattcggcttgttggattg
tcagcaactcttccaaattatgaggacgtggctgtatttttgcgagttgatctgaagaaa
ggactcttccattttgacaatagctataggcctgttccgttggctcaacagtatattgga
attactgttaagaagccactgcagagattccagttgatgaatgacgtttgctatgagaag
gtgattagtattgcaggaaagcatcaggtgcttattttcgtccattcacggaaggaaaca
tctaaaaccgctcgcgcgatacgggatactgcacttgctaatgacacccttggtaagttt
ttgaaggaggacagtataactcgggaagttctacagtctcaaactgagcttgtcaaaagc
aatgatctgaaagatcttttaccatatggttttgctattcatcatgcggggatggttaga
gccgatcggcaacttgtggaggaactttttgctgatggccatgtacaagtgttggtttca
acagcaactttagcatggggtgtcaatttgcctgcacatactgtgattataaaaggtacc
cagatttacaatcctgagaaaggagcatggactgaactcagtcctcttgatgttatgcaa
atgcttggccgtgctggacgtcctcaatatgatacctatggtgaaggaatcatattaacg
gggcatagcgaattgcaatattatttgtccttgatgaatcagcagctgccaatagaaagc
cagttcatctccaagttggctgatcagttaaatgctgagattgtcctcgggactgtgttg
aatgccaaggaagcatgtaaatggctcctatatacttacctctatgtccgcatggtgcgg
aatcccacactgtatggtctacctgctgatgctctcaagactgattatgctttggaggaa
aggcgtgccgacttggttcattctgctgctataatgctggacaagaataacttggtcaag
tatgacaggaaaagtggatatttccaggtgactgacttgggtcgcattgcgagttattat
tatataactcatgggacaatttccacgtacaatgagcatttgaagcctacgatgggtgat
attgaactttgtaggcttttctctcttagtgaggaattcaaatatgtaactgtcagacaa
gatgagaaaatggaattggcgaagcttctagaccgtgttcctattccgataaaagagagt
cttgaggagcctagtgccaagatcaatgtactattgcaggcatacatttcacggctgaag
cttgaaggattgtctctgtcatccgacatggtttacataactcagagtgctgcacgtttg
atgcgagccctttttgagattgttctgaagaggggctgggctcagttagctgagaaggcc
ttaaaatggtgcaaaatgataagcaagaggatgtggagtgtgcagacaccacttcgtcaa
ttccatggcataccaaatgaaatcctgatgaagttggagaagaaagatttggcttgggag
cgttattacgatctttcgtcacaagagttgggagagcttatccggttcacgaagatggga
agggtgttgcacaagtttattcaccagttcccaaagctgaacctctctgcacatgttcag
ccgattacccggtcagtcttgagggttgaattgactattacaccggatttccaatgggag
gacaaggttcatggatttgtagaacctttctggataattgttgaagataatgatggggag
tatattcttcatcatgagtatttcatgctcaagaaacagtatattgatgaagaccatact
ttgaatttcacagtcccaatatatgagccattgcccccacagtatttcattcgcgtcgtc
tccgacagatggctagggtcccagactgttttgcccgtctctttccgacatctgattttg
ccagagaaatatcctcctcccaccgagttactagacttgcaacctctgccagttactgca
ttgaggaatccagcatatgaaggactttatcaagatttcaagcagttcaatccggttcag
actcaggttttcacggtgttgtacaattcagatgacaatgtcttggttgcggctccaact
ggcagtgggaagaccatctgtgctgaatttgctatcttgaggaatcatcagaaaggacct
gatagtaccattcgtgctgtgtatatagctccactagaggctcttgctaaggagcggttc
agtgattggaaaaagaaatttggtgaccatctgggaatgagagttgttgaactaactggc
gagacagccagtgatctgaagctgttggagaagggacaactaattatcagcacacctgag
aaatgggatgcgttgtctcggcgctggaaacaacgtaagcatgttcagcaagtcagtctt
ttcattattgatgaattgcacctgattgggggtcagggtggcccaatcctggaggtgatc
gtctctcggatgaggtatatctcaagccaggttgagaacaagatccgcattgttgctttg
tcgacttccttagctaatgccaaggatttgggagaatggattggggccacatctcatgga
ctcttcaactttccacctggtgtaaggcctgtgccactggaaatacacattcaaggtgtt
gatattgctaactttgaagctaggatgcaagccatgacaaaacccacatatactgcaata
gtccaacatgcaaggaatggaaagcctgcaattgtgtatgttcccacaaggaagcatgct
cgcttgactgctgtagatctgatgacttattcaagcatggacagcgaagacacacctata
tttctgctacgatctgcggaagagctgggacctttcgtggacaggatcaatgaacctatg
ctgcaagagacactcaagtatggtgtgggctatttgcatgaggggttgagtgccactgat
caggatatagtgaaaacattgtttgaaactggatggatccaagtgtgtgtgatgaatggt
acaatgtgttggggagtaccgctatctgcgcatttggtggtggtcatgggaacacagtac
tatgatggtagggaaaatgcgcacactgattatcccgtcactgatttgttgcagatgatg
ggccatgccagtcgacctcttgtagataactctgggaagtgtgtcatcctctgtcatgca
ccacggaaggattactacaaaaagttcttgtatgaagcattcccagttgaaagccatctg
caacactatctccatgataatttgaatgctgaggtggtggttggtgttattcagaacaag
caagatgctgttgattaccttacatggaccttcatgtacagaaggctgacacagaatcca
aattactacaatctgcagggtgtgagtcataggcatttgtctgaccacctctcagagcta
gtggagaataccatcactgatttggaggcaagcaaatgtgtgacagttgaggatgaattt
ttgctttcacctttgaatctcggcatgatagcgtcatattattatatcagttacactaca
atagagcgttttagctcttctgtgacctccaaaacaaagttgaagggcttgctggaaata
ttggcctcagcatcagagttcgaacagctgccgatacgaccaggtgaagaggagttgata
agaaggttgattaatcacctgcgtttctcttttgagaatccgaaatacacagatcctcat
gtcaaggctaatgctcttttacaagcccatttctctaggcaactgttgggcggaaatctt
gcttctgaccagcaagaggtgcttctttctgctactaggctgcttcaggcaatggttgat
gttatttccagtaatggttggcttagtctagcacttctaacaatggaggtgagccagatg
gtgacacagggaatgtgggaacgtgactcaatgcttcttcagcttccacacttcacaaag
gaattggctaagaagtgccaagaaaatccagggaagagtatagagacagtgtttgattta
gtggagatggaagatgacgagaggcgtgcgctcttgcaaatgtcagatttgcagcttctg
gatattgcccggttctgtaatcggtttccaaacattgatttggcgtttgatgtgctggac
agtaataatgtgagtgctggagacgatgtaagtgtgcaggtaatccttgagcgagatctt
gagggtagaacagaagttggacctgtttttgcacctagatatcccaaagccaaggaggaa
ggatggtggcttgttgtcggggatacaaagagcaaccaattactggccattaagagagtt
actctccaaaggaaatctcgggtcaagctggattttgctgctcctgctgaagctggaaca
aggaactacacactgtatttcatgtgcgattcttatctgggttgtgaccaggaatataac
tttacacttgatgttaaaccgtcaatggctgaagatgacagtggaagagaatga
DBGET
integrated database retrieval system
