Capsicum annuum (peppers): 107875708
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Entry
107875708 CDS
T04646
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107875708
09123 Folding, sorting and degradation
03018 RNA degradation
107875708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107875708
03041 Spliceosome [BR:
cann03041
]
107875708
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107875708
mRNA degradation factors
5'-3' decay
Lsm complex
107875708
Spliceosome [BR:
cann03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107875708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
107875708
NCBI-ProteinID:
XP_047269979
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All DBs
Position
6:complement(218152733..218156115)
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AA seq
98 aa
AA seq
DB search
MSAGLGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEDLDNNLDMSKLRAHPLKPVVH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctggacttgggcttgagtctcttgttgatcaaaccatctcagttatcacaaat
gatggacggaatattgtgggagttttgagaggattcgaccaggctacaaacttgattctt
gatgaatctcatgaaagagtgtattcaacaaaggaaggtgtacagcaactcgtgttaggt
ctttatatcataaggggggacaatataagcgtcgttggggaattagatgaagatctggat
aataacttggatatgtcaaaactgagagcacatcctctaaagccagtcgttcactga
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