KEGG   Capsicum annuum (peppers): 107875708
Entry
107875708         CDS       T04646                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03018  RNA degradation
cann03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107875708
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107875708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cann03019]
    107875708
   03041 Spliceosome [BR:cann03041]
    107875708
Messenger RNA biogenesis [BR:cann03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107875708
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107875708
Spliceosome [BR:cann03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107875708
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 107875708
NCBI-ProteinID: XP_047269979
LinkDB
Position
6:complement(218152733..218156115)
AA seq 98 aa
MSAGLGLESLVDQTISVITNDGRNIVGVLRGFDQATNLILDESHERVYSTKEGVQQLVLG
LYIIRGDNISVVGELDEDLDNNLDMSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcagctggacttgggcttgagtctcttgttgatcaaaccatctcagttatcacaaat
gatggacggaatattgtgggagttttgagaggattcgaccaggctacaaacttgattctt
gatgaatctcatgaaagagtgtattcaacaaaggaaggtgtacagcaactcgtgttaggt
ctttatatcataaggggggacaatataagcgtcgttggggaattagatgaagatctggat
aataacttggatatgtcaaaactgagagcacatcctctaaagccagtcgttcactga

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