Capsicum annuum (peppers): 107875801
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Entry
107875801 CDS
T04646
Name
(RefSeq) RNA polymerase sigma factor sigA
KO
K03086
RNA polymerase primary sigma factor
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107875801
Transcription machinery [BR:
cann03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107875801
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_AsnC-type
HTH_24
Motif
Other DBs
NCBI-GeneID:
107875801
NCBI-ProteinID:
XP_016578129
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Position
6:216318840..216324643
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AA seq
506 aa
AA seq
DB search
MAIAAVIGLYAGNRNLSSSFYYSDLTEKLACSGDHALICNPTRNVINAKKSSNYSTGYGS
NRETQSVKAVKEHVDIASNQSEVEPWVRMLRQLQNESCSTEEDSVEVLLLLQKSMLEKQW
NLSAEMTLADFPPNEKNCKKKMQITCSGTSARRRRMDTRKKVQLPKTSAAANSAGKRLRS
VVGPELQQNRLKGYINGVVNQELLTHKEVVQLSKRIKYGLYLDEQKSRLKEKMGCEPSDD
QLAVSLKISLADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDSMGTEMADLIQGGLIGL
LRGIEKFDHSRGFKISTYVYWWIRQGVTRALVENSRTLRLPIHLHERLSLIRNAKIKLKE
KGIAPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPALNGLPGATLHSYIADNRVE
NSPWHGVDGLALKDEVNNLISSTLRDRERDIIRLYYGLDNESLTWEDISRRIGLSRERVR
QVGLVALEKLKHAARKSRLDAMLVKH
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggccattgctgcagttattggactctatgcaggaaatagaaacctaagctcgtccttc
tattattccgatcttactgaaaagttggcttgtagtggtgatcatgctttgatctgcaat
cctacgaggaatgtgatcaatgctaagaagtcatctaattatagcaccggttatggttcc
aatcgagaaacacaatctgttaaggctgttaaggagcatgtagacatcgcatctaatcaa
tccgaagtggagccatgggttcgaatgttgagacagttgcagaatgaaagctgcagtact
gaagaagattcggtggaggttcttctgctgctacagaaatctatgcttgaaaaacaatgg
aatctttcagctgagatgacattggcagatttcccaccaaatgaaaagaactgtaaaaag
aagatgcagatcacttgttcagggacgtctgctaggcggaggagaatggatactcgtaaa
aaagttcaacttccaaaaacttcagctgcagcaaatagtgctggcaagcgactgagatct
gttgtcggtccagagctacaacagaaccgtttaaaaggttacataaatggtgtcgtaaac
caagaactgcttacacataaggaagtggtgcaattatccaaaagaatcaaatatggtctt
tatttagatgaacagaagtcaaggctgaaggaaaaaatgggatgtgaaccttccgacgat
caactcgcggtttccttgaagatatctcttgctgatttacgatctacattaattgagtgt
tccttggcaagagaaaaacttgcgatgagcaatgttcgtctcgtcatgtcaattgcacaa
agatatgatagcatgggtactgaaatggctgacctcattcaggggggtcttattggacta
cttcgcgggatagagaaatttgatcactcacgaggattcaaaatctcaacttacgtttat
tggtggattcgtcagggtgtcacccgagctttagttgagaactcaagaaccttaagactg
cctatacatctgcatgaaagactgagtttgatccgtaatgcaaaaatcaagcttaaagag
aagggaatagctccatcaatcgaaaaaatagctgaatgccttaacatgtcccagaagaaa
gttaggaatgcaactgaggcaagcagcaaggtattttcacttgatagagaagcatttccc
gctttaaatggccttcctggagcgacacttcatagctacattgctgataatcgcgtggag
aacagtccgtggcatggagttgatggattggcgctcaaggatgaagtaaacaatctcatt
tcttcaactcttagggatcgcgagagagatattatccgactgtactatggtctggacaat
gagagccttacatgggaggatattagtagaaggataggtttgtccagagaaagggtgagg
caggttggattagttgcacttgagaaattaaaacatgctgccaggaagagccgattagat
gcaatgttggttaaacattga
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